Table 1.
Gene | Status | Coding DNA | Protein | dbSNP | Frequency in ExAC | Prediction* | Allele frequency | Case | |
---|---|---|---|---|---|---|---|---|---|
Tumor | Normal | ||||||||
BRCA1 | germline | c.4883T > C | p.M1628T | rs4986854 | 0.0015 | B; T; B | 0.45 | 0.50 | Case 42 |
BRCA2 | germline | c.53G > A | p.R18H | rs80358762 | 0.00004 | B; T; D | 0.61 | 0.49 | Case 29 |
BRCA2 | germline | c.551T > C | p.L184P | rs80358775 | — | C; D; D | 0.41 | 0.45 | Case 7 |
BRCA2 | germline | c.623T > G | p.V208G | rs80358865 | 0.00006 | U; D; D | 0.50 | 0.45 | Case 32 |
BRCA2 | germline | c.964A > C | p.K322Q | rs11571640 | 0.00006 | C; D; D | 0.55 | 0.56 | Case 11 |
BRCA2 | germline | c.1744A > C | p.T582P | rs80358457 | 0.0002 | C; D; D | 0.46 | 0.49 | Case 6 |
BRCA2 | germline | c.2350A > G | p.M784V | rs11571653 | 0.0003 | B; T; B | 0.59 | N.A.** | Case 19 |
BRCA2 | germline | c.2396A > G | p.K799R | — | — | N; T; B | 0.50 | 0.50 | Case 28 |
BRCA2 | germline | c.6131 G > T | p.G2044V | rs56191579 | 0.00004 | C; T; B | 0.72 | 0.53 | Case 2 |
BRCA2 | germline | c.6444_6445del | p.S2148fs | rs80359592 | — | P; N; N | 0.45 | 0.50 | Case 24 |
BRCA2 | germline | c.8891G > C | p.R2964T | — | — | N; D; D | 0.48 | 0.47 | Case 35 |
BRCA2 | germline | c.9875C > T | p.P3292L | rs56121817 | 0.00007 | C; D; PD | 0.38 | 0.51 | Case 11 |
PALB2 | germline | c.2228A > G | p.Y743C | rs141749524 | 0.0001 | C; T; B | 0.50 | 0.50 | Case 3 |
*Predictions are noted in the order of ClinVar, SIFT and PolyPhen-2, and abbreviations are B, benign; C, conflicting interpretations of pathogenicity; D, damaging; N, no information; P, pathogenic; PD, possibly damaging; T, tolerant; and U, uncertain significance.
**N.A., not available because existence of this variation was confirmed by Sanger sequencing.