Table 1.
General genomic features of the obligatory and facultative symbionts of Bemisia tabaci used for the metabolic analysis
| Symbiont | Host species | Co-occurring symbionts | Accession | Coverage | N50 (kb) | Size (Mb) | Number of Contigs | CDSb | Number of ECsc |
|---|---|---|---|---|---|---|---|---|---|
| Portiera | MED-Q1-Spain | HC [32] | CP003835.1 | 41× [454, I]a | – | 0.36 | 1 | 247 | 100 |
| Cardinium | MED-Q1-Spain | PH [40] | GCA_000689375.1 | > 600× [454, I]a | 612 | 1.01 | 11 + 1 | 739 | 112 |
| Hamiltonella | MED-Q1-China | P [21] | GCA_000258345.1 | 145 x [I]a | 11.8 | 1.84 | 404 | 1806 | 398 |
| Hamiltonella | MEAM1-USA | PR [71] | http://www.whiteflygenomics.org | NA[P, I]a | – | 1.74 | 1 | 1695 | 434 |
| Rickettsia sp. | MEAM1-China | PH [39] | GCA_000265225.2 | 138×[I]a | 8.5 | 1.22 | 219 | 1397 | 247 |
| Rickettsia sp. | MEAM1-USA | PH [71] | http://www.whiteflygenomics.org | NA[P,I]a | – | 1.38 | 1 | 1522 | 264 |
| Wolbachia sp. | MED-Q2-Israel | PARW | PRJEB15492 | 30×[454, I]a | 6.3 | 1.25 | 297 | 1339 | 253 |
P, C, H, R, W represent Portiera, Cardinium, Hamiltonella (both genomes), Rickettsia (both genomes) and Wolbachia, respectively
aTechnology used for sequencing: 454 GS-FLX Titanium [454], Illumina [I] and PacBio [P]
bNumber of CDS obtained using the JGI annotation pipeline
cFollowing annotation, filtering and manual curation