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. 2018 Jun;188(6):1430–1446. doi: 10.1016/j.ajpath.2018.02.010

Table 2.

Primers Used for RT-qPCR Determinations

Gene Sequence GenBank accession no.
Cre F: 5′-TGTTAATCCATATTGGCAGAACGA-3′ X03453
R: 5′-ATCCATCGCTCGACCAGTTTA-3′
Dll1 F: 5′-CTCTTCCCCTTGTTCTAAC-3′ NM_007865
R: 5′-ACAGTCATCCACATTGTC-3′
Dll3 F: 5′-TCTATCTTGTCCCTTCTCTATCA-3′ NM_007866
R: 5′-AATCATTCAGGCTCCATCTC-3′
Dll4 F: 5′-TGACAAGAGCTTAGGAGAG-3′ NM_019454
R: 5′-GCTTCTCACTGTGTAACC-3′
Hes1 F: 5′-ACCAAAGACGGCCTCTGAGCACAGAAAGT-3′ NM_008235
R: 5′-ATTCTTGCCCTTCGCCTCTT-3′
Hes5 F: 5′-GGAGATGCTCAGTCCCAAGGAG-3′ NM_010419
R: 5′-TGCTCTATGCTGCTGTTGATGC-3′
Jag1 F: 5′-TGGGAACTGTTGTGGTGGAGTCCG-3′ NM_013822
R: 5′-GTGACGCGGGACTGATACTCCT-3′
Jag2 F: 5′-AAGGTGGAAACAGTTGT-3′ NM_010588
R: 5′-CACGGGCACCAACAG-3′
Notch1 F: 5′-GTCCCACCCATGACCACTACCCAGTTC-3′ NM_008714
R: 5′-GGGTGTTGTCCACAGGTGA-3′
Notch1NICD F: 5′-GTGCTCTGATGGACGACAAT-3′ NM_008714
R: 5′-GCTCCTCAAACCGGAACTTC-3′
Notch2PEST F: 5′-CCATTGTGCCAACCTATCAT-3′ NM_010928
R: 5′-TTGAGGAGGCGTAACTGT-3′
Notch2ΔPEST F: 5′-GGCTTTCCCACCTACCAT-3′ Not applicable
R: 5′-TAGTCGGGCACGTCGTAG-3′
Notch2 F: 5′-TGACGTTGATGAGTGTATCTCCAAGCC-3′ NM_010928
R: 5′-GTAGCTGCCCTGAGTGTTGTGG-3′
Notch3 F: 5′-CCGATTCTCCTGTCGTTGTCTCC-3′ NM_008716
R: 5′-TGAACACAGGGCCTGCTGAC-3′
Notch4 F: 5′-CCAGCAGACAGACTACGGTGGAC-3′ NM_010929
R: 5′-GCAGCCAGCATCAAAGGTGT-3′
Rpl38 F: 5′-AGAACAAGGATAATGTGAAGTTCAAGGTTC-3′ NM_001048057; NM_001048058; NM_023372
R: 5′-CTGCTTCAGCTTCTCTGCCTTT-3′
Tnfrsf11b F: 5′-CAGAAAGGAAATGCAACACATGACAAC-3′ NM_009399
R: 5′-GCCTCTTCACACAGGGTGACATC-3′
Tnfsf11 F: 5′-TATAGAATCCTGAGACTCCATGAAAAC-3′ NM_011613
R: 5′-CCCTGAAAGGCTTGTTTCATCC-3′

GenBank accession numbers identify the transcripts recognized by primer pairs (https://www.ncbi.nlm.nih.gov/nuccore).

F, forward; R, reverse; RT-qPCR, real-time quantitative RT-PCR.