Table 2.
Performance of Bayesian and recursive partitioning models and their 5-fold cross-validation results.
Model | TP | FN | FP | TN | SE | SP | MCC | Q+ | Q− |
---|---|---|---|---|---|---|---|---|---|
NB-a | 1091 | 35 | 223 | 5206 | 0.969 | 0.959 | 0.874 | 0.830 | 0.993 |
NB-b | 1119 | 8 | 21 | 5408 | 0.993 | 0.996 | 0.985 | 0.982 | 0.999 |
NB-c | 749 | 316 | 455 | 5037 | 0.704 | 0.917 | 0.591 | 0.622 | 0.941 |
NB-d | 1054 | 11 | 75 | 5416 | 0.990 | 0.986 | 0.953 | 0.933 | 0.998 |
RP-a | 1113 | 13 | 51 | 5379 | 0.988 | 0.991 | 0.966 | 0.956 | 0.998 |
RP-b | 1111 | 15 | 49 | 5381 | 0.987 | 0.991 | 0.966 | 0.958 | 0.997 |
RP-c | 1007 | 57 | 177 | 5314 | 0.946 | 0.968 | 0.876 | 0.850 | 0.989 |
RP-d | 1022 | 42 | 95 | 5396 | 0.960 | 0.983 | 0.925 | 0.915 | 0.992 |
Note: NB-a: NB model with MOE 2D descriptors; NB-b: NB model with MOE 2D descriptors + ECFP_6; NB-c: NB model with DS 2D descriptors; NB-d: NB model with DS 2D descriptors + ECFP_6; RP-a: RP model with MOE 2D descriptors; RP-b: RP model with MOE 2D descriptors + ECFP_6; RP-c: RP model with DS 2D descriptors; RP-d: RP model with DS 2D descriptors + ECFP_6.