TABLE 1.
List of Clostridium difficile isolates and genomes used for cgMLST target definition
| Isolate | Clade | BAPS partition | MLST ST | PCR ribotype | Toxinotypea | NCBI RefSeq/ENA SRA accession no. (reference) |
|---|---|---|---|---|---|---|
| 630 (reference) | 1 | Cd06 | 54 | 012 | 0 | NC_009089 |
| 2402 | 1 | Cd06 | 199 | SLO 086 | XXXIII | ERS2050168 (this study) |
| CD196 (R12087) | 2 | Cd06 | 1 | 027 | IIIb | NC_013315 |
| 8785 | 2 | Cd06 | 196 | 109 | IXc | ERS2050173 (this study) |
| C00007686 | 3 | None | 5 | SAMEA2240504 (39) | ||
| 1470 | 4 | Cd05 | 37 | 017 | VIII | ERS2050166 (this study) |
| M120 | 5 | Cd03 | 11 | 078 | V | NC_017174 (40) |
| SUC36 | 5 | Cd03 | 195 | 078 | XVI | ERS2050188 (this study) |
| 173070 | C-IIb | Cd01 | 200 | 151 | XXXII | ERS2050167 (this study) |
| ZZV13-5576 | C-I | Cd02 | 297 | SLO 229 | Paloc negative | ERR2216002 (this study) |
| ZZV14-6045 | C-IIIb | Cd04 | 343 | SLO 205 | PaLoc negative | ERR2216003 (this study) |