TABLE 1.

Summary of RNA sequencing of TG from calves used in this study^a

Sampleb	No. of raw reads	No. of reads after trimming	No. of mapped reads	Mapping (%)
				Concordant pair	Overall
Latency (1)	87,772,072	86,899,588	80,341,469	84.90	91.53
Latency (2)	113,935,336	113,602,597	103,298,949	83.70	90.66
Latency (3)	103,295,710	102,763,023	94,102,756	84.60	91.10
30 min (1)	130,998,440	130,868,656	68,976,317	49.80	52.65
30 min (2)	134,891,362	134,664,406	46,302,068	32.20	34.33
1.5 h (1)	181,545,774	181,349,993	97,355,270	50.60	53.63
1.5 h (2)	118,128,452	117,968,772	109,163,219	86.50	92.41
1.5 h (3)	78,031,304	77,912,973	71,808,615	86.30	92.03
3 h (1)	20,268,356	20,254,807	19,210,229	90.10	94.78
3 h (2)	61,588,174	61,550,670	58,667,117	91.00	95.26
3 h (3)	193,385,058	193,130,128	181,472,604	88.90	93.84
Uninfected	146,102,758	145,870,066	134,616,584	86.20	92.14

^aSummary of reads for RNA-sequencing results during latency (3 calves). Reads for latently infected calves treated with DEX for 30 min (2 calves), 1.5 h after DEX treatment (3 calves), and 3 h after DEX treatment (3 calves) are also provided. As a control, RNA sequencing was performed from an uninfected calf.

^bThe numbers in parentheses denote TG from different animals.