Table 1. RNA samples used in this study.
Cross-specificity and cross-detection results.
| Provided by | Pathogen | Strains (Serotype) | RT-LAMP protocols | |||
|---|---|---|---|---|---|---|
| DENV1 | DENV2 | DENV3 | DENV4 | |||
| Robert Koch Institutea | DENV | ATCC VR-344 (D1) | + | - | - | - |
| ATCC VR-345 (D2) | - | + | - | - | ||
| ATCC VR-1256 (D3) | - | - | + | - | ||
| ATCC VR-1257 (D4) | - | - | - | + | ||
| Institut Pasteur Parisb | DENV | KDH0026A (D1) | + | - | - | - |
| KDH0002A (D1) | + | - | - | - | ||
| KDH0030A (D1) | + | - | - | - | ||
| KDH0032A (D1) | + | - | - | - | ||
| 30173/10 (D1) | + | - | - | - | ||
| 30520/09 (D1) | + | - | - | - | ||
| DJOM2.9.12 (D1) | + | - | - | - | ||
| R0712259 (D2) | - | + | - | - | ||
| DJ.OS.1.7.12 (D2) | - | + | - | - | ||
| DJ.MO.1.7.12 (D2) | - | + | - | - | ||
| DJWA1.7.12 (D3) | - | - | + | - | ||
| KDH0012A (D3) | - | - | + | - | ||
| KDH0014A (D3) | - | - | + | - | ||
| KDH0010A (D3) | + | - | + | - | ||
| VIMFH4 (D4) | + | - | - | + | ||
| University of Stirlingc | DENV | DEN1/T081117 (D1) | + | - | - | - |
| YFV | YFV/T090109 | - | - | - | - | |
| WNV | WNV P2 24.07.08 | - | - | - | - | |
| NTAV | Ntaya P3 DPP 8.8.13 | - | - | - | - | |
| Unité des Virus Emergentsd | ZIKV | H/PF/2013 | - | - | - | - |
| MAST Diagnostica GmbHe | S. Typhi | ST | - | - | - | - |
| S. Paratyphi | SP | - | - | - | - | |
| S. pneumoniae | Spn5 | - | - | - | - | |
| P. falciparum | 3D7 | - | - | - | - | |
a Dr Pranav Patel, Robert Koch Institute, Centre for biological security 1 (ZBS1), Berlin, Germany
b Dr Anavaj Sakuntabhai (Functional Genetics of Infectious Diseases Unit) and Dr Louis Lambrechts (Department of Genomes and Genetics). Isolates from clinical samples in Myanmar, Cambodia, Thailand and Gabon between 2007 and 2010. VIMFH4 was isolated in 1976.
c Prof. Manfred Weidmann, Institute of Aquaculture, University of Stirling, United Kingdom.
d Prof. Xavier de Lamballerie, Unité des Virus Emergents, Marseille, France.
e Dr Mohammed Bakheit, MAST Diagnostica GmbH, Reinfeld, Germany.