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CID MS3 spectra of the disulfide-dissociated peptides TH41 (top) and TH36 peptides (bottom) within the CH3 domain. One or five fragment ions were missing for TH36 or TH41 to achieve a CID MS3 sequence coverage of 100%. Both C376 (H) and C434 (H) residues were identified by high confidence, and thus the location of disulfide linkages were unambiguously identified.
