Fig. 6.

Overlapping of ribosome footprint coverage, mass spectrometry data, and sequence conservation (phyloP score) across mouse lncRNA CCT6A. Top eight panels indicate the ribosome coverage (arbitrary unit) across the CCT6A-003 transcript, where the colored region represents a putatively translated ORF identified by applying three coding metrics (FLOSS, RRS, and Framescore). Orange and red regions indicate this putative ORF has passed two and three coding filters, respectively. The MS data panel shows the overlapping of peptides transformed from mass spectrometry data in this transcript. The phyloP panel shows the base-wise conservation scores with positive values (blue) meaning slower evolution than expected, and negative values (gray) suggesting faster evolution than expected