Table 2.
Gene colinearity of the cytokinin signaling components
| Gene pair | Multiplicon | Anchor pointsa | Ks/median Ksb |
|---|---|---|---|
| BrarapCHK04/CHK03 | 340,248 | 5 | 1.03/1.05 |
| Syntenic region | |||
| ZeamayCHK03/CHK04 | 11,281 | 135 | 0.19/0.26 |
| ZeamayCHK05/CHK06 | 10,125 | 315 | 0.15/0.29 |
| GosraiCHK02/CHK06 | 59,516 | 31 | 0.39/0.48 |
| GosraiCHK02/CHK04 | 65,400 | 27 | 0.34/0.52 |
| GosraiCHK04/CHK06 | 36,049 | 78 | 0.38/0.60 |
| GosraiCHK03/CHK07 | 36,049 | 78 | 0.47/0.60 |
| GosraiCHK03/CHK08 | 125,670 | 13 | 0.47/0.69 |
| GosraiCHK07/CHK08 | 148,631 | 11 | 0.43/0.46 |
| GosraiCHK01/CHK05 | 98,488 | 17 | 0.39/0.57 |
| MusacuCHK05/CHK15 | 11,287 | 133 | 0.37/0.54 |
| BrarapHPT01/HPT03 | 52,943 | 36 | 1.12/1.24 |
| BrarapHPT01/HPT02 | 296,202 | 6 | 0.93/1.34 |
| BrarapHPT02/HPT03 | 45,950 | 44 | 0.32/0.38 |
| BrarapHPT07/HPT08 | 29,877 | 334 | 0.63/0.37 |
| ArathaHPT01/HPT02 | 99,381 | 17 | 0.50/1.19 |
| MusacuHPT06/HPT09 | 17,637 | 17 | 0.36/0.66 |
| MusacuHPT07/HPT09 | 39,756 | 6 | 0.36/0.85 |
| ZeamayHPT01/HPT02 | 23,667 | 10 | 0.12/0.28 |
| OrsaJaHPT01/HPT02 | 20,328 | 13 | 0.83/1.16 |
| OrsaJaHPT03/HPT04 | 13,603 | 40 | 1.02/1.15 |
| BrarapRRA02/RRA12 | 163,623 | 10 | 0.38/0.35 |
| BrarapRRA02/RRA07 | 65,158 | 27 | 0.47/0.37 |
| BrarapRRA07/RRA12 | 31,421 | 160 | 0.30/0.39 |
| BrarapRRA07/RRA11 | 49,477 | 40 | 0.87/1.05 |
| BrarapRRA04/RRA06 | 151,125 | 22 | 0.84/1.13 |
| BrarapRRA06/RRA10 | 56,429 | 33 | 0.29/0.39 |
| BrarapRRA08/RRA09 | 30,151 | 290 | 0.43/0.37 |
| BrarapRRA01/RRA03 | 31,812 | 143 | 0.41/0.36 |
| BrarapRRA17/RRA13 | 82,131 | 21 | 1.01/1.01 |
| BrarapRRA17/RRA20 | 101,049 | 18 | 0.92/1.02 |
| BrarapRRA17/RRA21 | 29,311 | 402 | 0.35/0.37 |
| BrarapRRA21/RRA13 | 65,663 | 27 | 0.11/1.03 |
| BrarapRRA21/RRA22 | 39,677 | 61 | 1.20/1.20 |
| BrarapRRA13/RRA22 | 30,346 | 258 | 0.25/0.36 |
| BrarapRRA13/RRA20 | 31,080 | 178 | 0.27/0.38 |
| BrarapRRA14/RRA15 | 61,084 | 30 | 0.79/1.19 |
| BrarapRRA14/RRA18 | 30,346 | 258 | 0.26/0.36 |
| BrarapRRA15/RRA18 | 40,545 | 58 | 1.05/1.11 |
| BrarapRRA15/RRA22 | 350,553 | 5 | 16.41/2.30 |
| OrsaJaRRA06/RRA07 | 10,605 | 211 | 1.30/1.30 |
| OrsaJaRRA08/RRA09 | 12,741 | 56 | 1.47/1.33 |
| OrsaJaRRA01/RRA02 | 10,348 | 252 | 0.02/0.1 |
| AralyrRRA02/RRA04 | 36,506 | 75 | 1.1/0.91 |
| AralyrRRA05/RRA07 | 60,452 | 30 | 0.96/0.88 |
| AralyrRRA01/RRA03 | 31,061 | 179 | 0.62/0.88 |
| AralyrRRA09/RRA10 | 35,707 | 80 | 0.87/0.82 |
| ArathaRRA03/RRA04 | 34,065 | 96 | 0.83/0.91 |
| ArathaRRA05/RRA06 | 56,388 | 33 | 1.18/0.96 |
| ArathaRRA03/RRA04 | 34,327 | 93 | 0.77/0.96 |
| ArathaRRA07/RRA08 | 30,310 | 263 | 1.18/0.9 |
| ArathaRRA09/RRA11 | 30,310 | 263 | 0.74/0.9 |
| ZeamayRRA05/RRA08 | 11,007 | 162 | 1.26/0.26 |
| ZeamayRRA10/RRA12 | 33,006 | 7 | 1.87/2.23 |
| ZeamayRRA11/RRA12 | 11,559 | 116 | 0.40/0.33 |
| MusacuRRA06/RRA07 | 37,422 | 6 | 0.98/0.66 |
| MusacuRRA07/RRA08 | 35,224 | 7 | 1.45/1.16 |
| MusacuRRA11/RRA14 | 16,973 | 19 | 0.50/0.50 |
| MusacuRRA11/RRA13 | 35,273 | 7 | 0.73/0.64 |
| MusacuRRA03/RRA20 | 15,306 | 25 | 0.74/0.60 |
| MusacuRRA01/RRA02 | 25,508 | 9 | 0.41/0.41 |
| MusacuRRA02/RRA04 | 16,323 | 21 | 0.53/0.72 |
| BrarapRRB41/RRB42 | 33,554 | 102 | 0.33/0.34 |
| BrarapRRB32/RRB33 | 30,151 | 290 | 0.36/0.37 |
| BrarapRRB37/RRB39 | 40,489 | 58 | 0.48/0.42 |
| BrarapRRB47/RRB48 | 122,822 | 14 | 0.38/0.33 |
| BrarapRRB59/RRB60 | 44,640 | 47 | 0.56/0.39 |
| AralyrRRB18/RRB16 | 70,367 | 25 | 1.07/0.92 |
| AralyrRRB25/RRB24 | 105,708 | 16 | 0.93/0.78 |
| AralyrRRB37/RRB25 | 234,790 | 7 | 6.90/6.90 |
| ArathaRRB22/RRB19 | 56,277 | 33 | 1.31/0.82 |
| ArathaRRB23/RRB24 | 111,168 | 15 | 0.95/1.19 |
| ArathaRRB23/RRB45 | 268,141 | 6 | 8.89/4.45 |
| OrsaJaRRB21/RRB27 | 12,291 | 73 | 1.34/1.34 |
| OrsaJaRRB21/RRB27 | 13,539 | 41 | 0.98/1.10 |
| ZeamayRRB24/RRB25 | 14,587 | 30 | 1.30/1.79 |
| ZeamayRRB21/RRB23 | 10,224 | 280 | 0.12/0.25 |
| ZeamayRRB18/RRB27 | 10,125 | 315 | 0.14/0.29 |
| MusacuRRB30/RRB33 | 17,165 | 18 | 0.40/0.56 |
| MusacuRRB30/RRB36 | 17,906 | 17 | 0.49/0.55 |
| MusacuRRB39/RRB42 | 16,390 | 21 | 0.47/0.72 |
| MusacuRRB53/RRB57 | 17,546 | 17 | 0.53/0.53 |
acolinear gene pairs
bKs distance of the gene pair given in column 1/median Ks distance of the multiplicon