Table 2.
Sequences summary for the different datasets including best-fitting nucleotide substitution models
| CRA-all | Mito-COI | Mito-16S | Mito-CRA | |
|---|---|---|---|---|
| Number of unique sequences | 86 | 33 | 33 | 33 |
| MSA length (bp) | 405 | 562 | 558 | 405 |
| %G | 20.4 | 18.9 | 22.3 | 20.9 |
| %A | 30.9 | 26.0 | 31.0 | 30.7 |
| %C | 21.4 | 24.4 | 20.5 | 21.0 |
| %T | 27.3 | 30.8 | 26.2 | 27.5 |
| Pinv | 0.09384 | 0.34741 (codon position 1&2) 0.04714 (codon position 3) |
0.36998 | 0.17559 |
| Overall mean K2P/p-distance | 0.16/0.14 | 0.21/0.18 | 0.16/0.143 | 0.16/0.14 |
| Best-fit model – (ML) | GTR + G | GTR + I + G | GTR + G | GTR + G |
| Best-fit model – (BI) | HKY + G | SYM + I + G | GTR + G | HKY + G |
ML Maximum Likelihood, BI Bayesian Inference, CR Control region, COI cytochrome c oxidase subunit 1, 16S 16S ribosomal RNA, MSA multiple sequence alignment, Pinv proportion of invariant sites