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. 2018 May 31;13(5):e0197448. doi: 10.1371/journal.pone.0197448

Table 2. Basic genome features of Steroidobacter cummioxidans strain 35Y.

Number of Contigs 126 (smallest: 3,181 bp, largest: 336,437 bp, average: ~62,986 bp)
Genome Size 7,936,208 (bp)
G+C Content (mol%) 60.94
Number of Genes 6,960 Protein encoding genes (PEGs) 6,906
tRNA 47
rRNA 7
Proteins with Predicted Functions 5,475
Hypothetical or Uncharacterized Proteins 1,431
Proteins with COG Annotations 2,637 Metabolism 35.61%
Cellular processes and signalling 17.29%
Information storage and processing 15.24%
Poorly characterized 18.54%
Multiple classes 13.31%
Proteins with KEGG Annotations 2,892
Membrane Transporters 479
Virulence Factors 909
Subcellular Localization Cytoplasmic 37.85%
Cytoplasmic membrane 20.50%
Extracellular 1.51%
Outer membrane 3.82%
Periplasmic 2.43%
Unclassified 33.88%
Prophages 2 (incomplete) 10.1 kb 8 PEGs
9.4 kb 9 PEGs
Insertion Elements 90
CRISPR Loci 3
Antibiotic Resistant Genes 50
Carbohydrate-Active Enzymes 269 Auxiliary Activity 5.20%
Carbohydrate Esterase 14.50%
Carbohydrate-Binding Module 15.99%
Glycoside Hydrolase 39.03%
Glycosyl Transferase 21.56%
Polysaccharide Lyase 3.72%