Table 1.
Summary of the sequencing data from red tilapia.
| Item | Reads Count (Percent) | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| PB-1 * | PB-2 | PB-3 | PR-1 * | PR-2 | PR-3 | WP-1 * | WP-2 | WP-3 | |
| Total reads | 9745021 | 10172163 | 9597796 | 9138122 | 9086032 | 8568364 | 9696144 | 10741698 | 12108798 |
| High-quality | 9712465 | 10139260 | 9567374 | 9110612 | 9061737 | 8542050 | 9664568 | 10707005 | 12069765 |
| (100%) | (100%) | (100%) | (100%) | (100%) | (100%) | (100%) | (100%) | (100%) | |
| 3′adapter_null | 48695 | 34324 | 47557 | 100967 | 39684 | 45828 | 19254 | 44297 | 139902 |
| (0.50%) | (0.34%) | (0.50%) | (1.11%) | (0.44%) | (0.54%) | (0.20%) | (0.41%) | (1.16%) | |
| Insert null | 2723 | 7882 | 2208 | 5979 | 11028 | 6166 | 11419 | 3320 | 11089 |
| (0.03%) | (0.08%) | (0.02%) | (0.07%) | (0.12%) | (0.07%) | (0.12%) | (0.03%) | (0.09%) | |
| 5′adapter_contaminants | 24540 | 37898 | 24172 | 20256 | 22141 | 36854 | 14270 | 11819 | 9483 |
| (0.25%) | (0.37%) | (0.25%) | (0.22%) | (0.24%) | (0.43%) | (0.15%) | (0.11%) | (0.08%) | |
| Smaller_than_18nt | 245041 | 685335 | 1303589 | 587330 | 1111375 | 811448 | 683397 | 413050 | 555142 |
| (2.52%) | (6.76%) | (13.63%) | (6.45%) | (12.26%) | (9.50%) | (7.07%) | (3.86%) | (4.60%) | |
| Poly A | 82 | 87 | 52 | 153 | 64 | 118 | 71 | 127 | 129 |
| (<0.01%) | (<0.01%) | (<0.01%) | (<0.01%) | (<0.01%) | (<0.01%) | (<0.01%) | (<0.01%) | (<0.01%) | |
| Clean reads | 9391384 | 9373734 | 8189796 | 8395927 | 7877445 | 7641636 | 8936157 | 10234392 | 11354020 |
| (96.69%) | (92.45%) | (85.60%) | (92.16%) | (86.93%) | (89.46%) | (92.46%) | (95.59%) | (94.07%) | |
* Skin color varieties of red tilapia: WP—whole pink, PB—pink with scattered black spots, PR—pink with scattered red spots.