| ADP | adenosine diphosphate |
| alt-NHEJ | alternative non-homologous end-joining |
| AOA1 | ataxia with oculomotor apraxia 1 |
| Arg | arginine |
| AsiDNA | a signal interfering DNA |
| ATM | ataxia telangiectasia mutated |
| ATR | ataxia telangiectasia and rad3-related |
| AUNIP | aurora kinase A and ninein interacting protein |
| BRCA1 | breast cancer gene 1 |
| BRCA2 | breast cancer gene 2 |
| CAKs | CDK activating kinases |
| Cas | CRISPR-associated nuclease |
| cdc25 | cell division cycle 25 |
| CDKs | cyclin-dependent kinases |
| CDKIs | CDK inhibitors |
| Chk1 | checkpoint kinase 1 |
| Chk2 | checkpoint kinase 2 |
| CRISPR | clustered regularly interspaced short palindromic repeats |
| CtIP | C-terminal-binding protein interacting protein |
| Dbait | DNA strand break bait |
| DDR | DNA damage response |
| DNA | deoxyribonucleic acid |
| DNA-PK | DNA-dependent protein kinase |
| DNA-PKCS | DNA-PK catalytic subunit |
| dsDNA | double-strand DNA |
| ERCC1 | excision-repair cross-complementation group 1 |
| Exo1 | exonuclease 1 |
| FDA | Food and Drug Administration |
| FEN1 | flap endonuclease 1 |
| G | glycine |
| G0 | resting |
| G1 | growth 1/gap 1 |
| G2 | pre-mitotic/gap 2 |
| gRNA | guide RNA |
| H | histidine |
| H2O2 | hydrogen peroxide |
| HR | homologous recombination |
| INK | CDK4 inhibitor |
| iPSCs | induced pluripotent stem cells |
| KIP | CDK inhibitor |
| LDL | low density lipoprotein |
| Lys | lysine |
| M | mitotic |
| mHtt | mutant huntingtin gene |
| MLH1 | MutL homolog 1 |
| MMEJ | microhomology-mediated end-joining |
| MRE11 | dsDNA break repair nuclease MRE11 |
| MRN | MRE11-RAD50-NBS1 |
| MSH1 | MutS homolog 1 |
| MSH2 | MutS homolog 2 |
| MSH3 | MutS homolog 3 |
| MSH6 | MutS homolog 6 |
| mTOR | mammalian target of rapamycin |
| MutH | Mutator H |
| MutL | Mutator L |
| MutS | Mutator S |
| MutSα | MSH2-MSH6 heteroduplex |
| MutSβ | MSH2-MSH3 heteroduplex |
| Myt1 | myelin transcription factor 1 |
| N | asparagine |
| NAD+ | nicotinamide adenine dinucleotide |
| NBS1 | nibrin |
| NHEJ | non-homologous end-joining |
| O2 | oxygen |
| O2− | superoxide |
| PAM | protospacer adjacent motif |
| PARP1 | poly (ADP-ribose) polymerase 1 |
| PAXX | paralog of XRCC4 and XLF |
| PCNA | proliferating cell nuclear antigen |
| PI3K | phosphatidylinositol 3 kinase |
| PIKKs | phosphoinositide 3 kinase-related kinases |
| RAD50 | dsDNA break repair protein RAD50 |
| RNA | ribonucleic acid |
| RNS | reactive nitrogen species |
| ROS | reactive oxygen species |
| RPA | replication protein A |
| S | DNA synthesis |
| SCAN1 | spinocerebellar ataxia with axonal neuropathy |
| Ser | serine |
| SSA | single-strand annealing |
| SSAP | single-strand annealing protein |
| ssDNA | single-strand DNA |
| TFIIH | transcription factor II human |
| Tim | Timeless |
| Tipin | Tim-interacting protein |
| USP4 | ubiquitin-specific protease 4 |
| XLF | XRCC4-like factor |
| XPA | xeroderma pigmentosum group A |
| XPB | xeroderma pigmentosum group B |
| XPC-RAD23B | xeroderma pigmentosum group C-RAD23 homolog B |
| XPD | xeroderma pigmentosum group D |
| XPF | xeroderma pigmentosum group F |
| XPG | xeroderma pigmentosum group G |
| XRCC1 | X-ray repair cross-complementation protein 1 |
| XRCC4 | X-ray repair cross-complementation protein 4 |
| Zn | zinc |