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. 2018 Mar 29;19(4):1035. doi: 10.3390/ijms19041035

Table 2.

In silico alteration of nucleotides to generate alternative SNP alleles, resulting in putative gain or loss of transcription factor binding sites.

SNPs Variation Predicted Transcription Factor Binding Site
Gain a Loss b Transcription Factor Binding Sequence c Score
SNP1 −304A>C - Sp1 CCCCC 100
SNP2 −285G>A AP-2 - CCCAGGG 100
SNP3 −209A>C - MyoD CAGCC 100
SNP4 −203A>G CP1 - ATTGC 100
SNP5 −188T>C - SRF TTCCTC 100

Note: a,b Generated after substitution of allele 1 (wild type) with allele 2 (mutant); c Based on TFSEARCH analysis.