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. 2018 May 29;6:e4844. doi: 10.7717/peerj.4844

Table 4. Prediction performance on 2136 Gal4 variants.

Feature vector input attributes based on in silico mutagenesis using tessellation of the Gal4 dimer.

Method Se Sp PPV BAR MCC AUC
10-fold CV classification:
RF 0.91 0.90 0.93 0.91 0.81 0.97
SVM 0.91 0.82 0.88 0.87 0.74 0.94
DT 0.89 0.87 0.91 0.88 0.76 0.93
NN 0.91 0.83 0.89 0.87 0.75 0.88
10-fold CV regression:
REPTree (r = 0.80) 0.96 0.86 0.91 0.91 0.83
SVR (r = 0.72) 0.92 0.84 0.89 0.88 0.77