Table 1. Summary of statistical tests used to determine genome-wide spatial correlations between extracellular receptor-like proteins (RLPs) and secreted peptides (SPs) versus intracellular nucleotide-binding leucine-rich repeat receptors (NLRs).
Query | Reference | Relative Kolmogorov-Smirnov P-valuea | Relative ECDF area correlationb | Relative ECDF deviation area P-value | Jaccard measure P–value | Projection test P–value | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Closec | Far | Overlapd | N | Overlap | N | ||||||||
eLRR vs. NLR genese | 256 | 366 | 3.2E-06 | 0.152 | <0.01 | ✓ | ✓ | 0.43 | ✓ | 0.44 | ✓ | ||
NLR vs. eLRR genese | 366 | 256 | 0.862 | -2.2E-04 | 0.72 | ✓ | 0.40 | ✓ | 0.34 | ✓ | |||
RLP vs. NLR genes | 152 | 366 | 1.2E-04 | 0.141 | 0.01 | ✓ | 0.44 | ✓ | 0.29 | ✓ | |||
NLR vs. RLP genes | 366 | 152 | 0.007 | 0.046 | 0.07 | ✓ | 0.45 | ✓ | 0.24 | ✓ | |||
SP vs. NLR genes | 104 | 366 | 0.009 | 0.167 | <0.01 | ✓ | 0.25 | ✓ | 0.21 | ✓ | |||
NLR vs. SP genes | 366 | 104 | 3.8E-04 | 0.064 | 0.02 | ✓ | 0.38 | ✓ | 0.14 | ✓ | |||
SP vs. RLP genes | 104 | 152 | 0.010 | 0.129 | 0.03 | ✓ | 0.12 | ✓ | 0.07 | ✓ | |||
RLP vs. SP genes | 152 | 104 | 8.2E-05 | 0.241 | <0.01 | ✓ | 0.05 | ✓ | 0.06 | ✓ | |||
LRR vs. ribosomal genese | 622 | 1134 | 0.002 | -0.054 | <0.01 | ✓ | <0.01 | ✓ | 0.21 | ✓ | |||
Ribosomal vs. LRR genese | 1134 | 622 | 0.289 | 0.021 | 0.21 | ✓ | <0.01 | ✓ | 0.02 | ✓ | |||
LRR vs. all other genese | 622 | 80305 | 0.000 | -0.261 | <0.01 | ✓ | <0.01 | ✓ | 8.9E-78 | ✓ | |||
All other genes vs. LRRe | 80305 | 622 | 2.4E-04 | 0.009 | <0.01 | ✓ | <0.01 | ✓ | ####### | ✓ |
a P values are shown for all tests in both directions, using one dataset as a query and the other one as a reference.
b ECDF: Empirical Distribution Cumulative Function
c For the relative distance test, positive and negative relative ECDF area correlation values are labeled as close and far, respectively.
d The outcome of Jaccard and projection tests is defined as overlapping or non-overlapping (N).
e The combination of RLP and SP genes are referred to as eLRR genes. Control comparisons include those of all predicted leucine-rich repeat (LRR) genes, consisting of RLP, NLR and SP genes, to ribosomal genes or those to all other coding genes of the Brassica napus genome.