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. 2018 Jun 1;13(6):e0198201. doi: 10.1371/journal.pone.0198201

Table 1. Summary of statistical tests used to determine genome-wide spatial correlations between extracellular receptor-like proteins (RLPs) and secreted peptides (SPs) versus intracellular nucleotide-binding leucine-rich repeat receptors (NLRs).

Query Reference Relative Kolmogorov-Smirnov P-valuea Relative ECDF area correlationb Relative ECDF deviation area P-value Jaccard measure P–value Projection test P–value
Closec Far Overlapd N Overlap N
eLRR vs. NLR genese 256 366 3.2E-06 0.152 <0.01 0.43 0.44
NLR vs. eLRR genese 366 256 0.862 -2.2E-04 0.72 0.40 0.34
RLP vs. NLR genes 152 366 1.2E-04 0.141 0.01 0.44 0.29
NLR vs. RLP genes 366 152 0.007 0.046 0.07 0.45 0.24
SP vs. NLR genes 104 366 0.009 0.167 <0.01 0.25 0.21
NLR vs. SP genes 366 104 3.8E-04 0.064 0.02 0.38 0.14
SP vs. RLP genes 104 152 0.010 0.129 0.03 0.12 0.07
RLP vs. SP genes 152 104 8.2E-05 0.241 <0.01 0.05 0.06
LRR vs. ribosomal genese 622 1134 0.002 -0.054 <0.01 <0.01 0.21
Ribosomal vs. LRR genese 1134 622 0.289 0.021 0.21 <0.01 0.02
LRR vs. all other genese 622 80305 0.000 -0.261 <0.01 <0.01 8.9E-78
All other genes vs. LRRe 80305 622 2.4E-04 0.009 <0.01 <0.01 #######

a P values are shown for all tests in both directions, using one dataset as a query and the other one as a reference.

b ECDF: Empirical Distribution Cumulative Function

c For the relative distance test, positive and negative relative ECDF area correlation values are labeled as close and far, respectively.

d The outcome of Jaccard and projection tests is defined as overlapping or non-overlapping (N).

e The combination of RLP and SP genes are referred to as eLRR genes. Control comparisons include those of all predicted leucine-rich repeat (LRR) genes, consisting of RLP, NLR and SP genes, to ribosomal genes or those to all other coding genes of the Brassica napus genome.