Table 1. Assembly statistics for the four cultivars.
Cultivar | SRA accession | Number of reads | Exome size | Transcripts | Average length | Median length | Maximum length | Minimum length | N50 |
---|---|---|---|---|---|---|---|---|---|
Brassica rapa genome v. 1.2 | NA | NA | 48237843 | 41173 | 1172 | 981 | 16227 | 150 | 1482 |
Flowering kale cv. 'White Crane' | SRX4020273 | 58423701 | 38832482 | 43520 | 892 | 658 | 15440 | 33 | 1320 |
Kohlrabi cv. 'Express Forcer' | SRX4020274 | 81188779 | 41036632 | 45318 | 906 | 679 | 16249 | 34 | 1315 |
Pak Choi | SRX4020272 | 88362643 | 54288367 | 36864 | 1473 | 1220 | 16633 | 100 | 1901 |
Turnip cv. 'Tokyo Hybrid' | SRX4020271 | 60949535 | 53529238 | 38568 | 1388 | 1157 | 16583 | 100 | 1792 |
Cuffmerge of the four cultivars | NA | NA | 65632843 | 48185 | 1362 | 1063 | 16599 | 34 | 1876 |
‘Number of reads’ column presents the number of Illumina single end 100 bp reads used to generate the assembly, giving ~100-200X average coverage of the exome. Transcript lengths are in bp.