Table 2. The number of discordances between the analysis pipelines according to the variant detection threshold used for the ultra-deep sequencing analyses.

Analysis pipelines	Number of discordances, n (%)
	1% threshold	2% threshold
AVA® versus SmartGene®	28 (18.4%)	8 (5.3%)
Geneious® versus SmartGene®	15 (7.0%)	2 (0.9%)