| ADAR2 | adenosine deaminase, RNA specific B1 |
| AGO2 | argonaute 2, RISC catalytic component |
| AKT | AKT serine/threonine kinase 1/protein kinase B |
| ANXA1 | annexin A1 |
| AR | androgen receptor |
| ARHI | DIRAS family GTPase 3 |
| ATG7 | autophagy related 7 |
| AVPR2 | arginine vasopressin receptor 2 |
| AXL | AXL receptor tyrosine kinase |
| BCL2 | B-cell lymphoma 2, apoptosis regulator |
| BECN1 | beclin 1 |
| BMF | Bcl2 modifying factor |
| BRAF | B-Raf proto-oncogene, serine/threonine kinase |
| BRAFP1 | B-Raf proto-oncogene, serine/threonine kinase pseudogene 1 |
| BUB1 | BUB1 mitotic checkpoint serine/threonine kinase |
| CCND1 | cyclin D1 |
| CCNE1 | cyclin E1 |
| CCNJ | cyclin J |
| CDC42 | cell division cycle 42 |
| CDK3 | cyclin dependent kinase 3 |
| CDK6 | cyclin dependent kinase 6 |
| ceRNA | competing endogenous RNA |
| c-Kit | KIT proto-oncogene receptor tyrosine kinase |
| c-Met | MET proto-oncogene, receptor tyrosine kinase |
| CRC | colorectal carcinoma |
| CRISPR | clustered regularly interspaced short palindromic repeats |
| CTNNA1 | catenin alpha 1 |
| CTNNA1P | catenin alpha 1 pseudogene |
| CXCR4 | C-X-C motif chemokine receptor 4 |
| CYP4Z1 | cytochrome P450 family 4 subfamily Z member 1 |
| CYP4Z2P | cytochrome P450 family 4 subfamily Z member 2, pseudogene |
| CYTH3 | cytohesin 3 |
| DNMT3B | DNA methyltransferase 3 beta |
| DRCE | drug-response related ceRNA |
| DVL2 | disheveled segment polarity protein 2 |
| EGFR | epidermal growth factor receptor |
| EGR1 | early growth response 1 |
| EMT | epithelial mesenchymal transition |
| EPHA4 | EPH receptor A4 |
| EZH2 | enhancer of zeste 2 polycomb repressive complex 2 subunit |
| FAK | focal adhesion kinase |
| FANCC | Fanconi anemia complementation group C |
| FASN | fatty acid synthase |
| FOXO3 | forkhead box O3 |
| FOXO3P | forkhead box O3 pseudogene |
| FTH1 | ferritin heavy chain 1 |
| FZD4 | frizzled class receptor 4 |
| GIT2 | GIT ArfGAP 2 |
| HCC | hepatocellular carcinoma |
| HER2 | erb-b2 receptor tyrosine kinase 2 |
| HIF-1α | hypoxia-inducible factor 1-alpha |
| HMGA1P6/7 | high mobility group AT-hook 1 pseudogene 6/7 |
| HMGA2 | high mobility group AT-hook 2 |
| HMGB1 | high mobility group box 1 |
| hTERT | human telomerase reverse transcriptase |
| IGF1R | insulin like growth factor 1 receptor |
| IGF2 | insulin like growth factor 2 |
| INST6 | integrator complex subunit 6 |
| INTS6P1 | integrator complex subunit 6 pseudogene 1 |
| KRAS | KRAS proto-oncogene, GTPase |
| LIN28 | lin-28 homolog |
| lncRNA | long noncoding RNA |
| LSCC | laryngeal squamous cell carcinoma |
| MCL1 | MCL1, BCL2 family apoptosis regulator |
| MDR1 | ATP binding cassette subfamily B member 1 |
| miRNA | microRNA |
| MKI67 | marker of proliferation Ki-67 |
| MMP2 | matrix metallopeptidase 2 |
| MRP1 | ATP binding cassette subfamily C member 1 |
| MYCN | MYCN proto-oncogene, bHLH transcription factor |
| NF-κB | nuclear factor kappa B |
| NSCLC | non-small cell lung cancer |
| OCT4/POU5F1 | POU class 5 homeobox 1 |
| OSCC | oral squamous cell carcinoma |
| PDK1 | pyruvate dehydrogenase kinase 1 |
| PI3K | phosphatidylinositol-4,5-bisphosphate 3-kinase |
| PIK3CD | phosphatidylinositol-4,5-Bisphosphate 3-Kinase Catalytic Subunit Delta |
| PLXNC1 | plexin C1 |
| PPIB | peptidylprolyl isomerase B |
| PRC2 | polycomb repressive complex 2 |
| PTEN | phosphatase and tensin homolog |
| PTENP1 | phosphatase and tensin homolog pseudogene 1 |
| RELA | RELA proto-oncogene, NF-κB subunit |
| RHOA | ras homolog family member A |
| RISC | RNA-induced silencing complex |
| ROCK2 | Rho associated coiled-coil containing protein kinase 2 |
| RSU1P2 | Ras suppressor protein 1 pseudogene 2 |
| SMAD7 | SMAD family member 7 |
| SOCS6 | suppressor of cytokine signaling 6 |
| SOX9 | SRY (sex determining region Y)-box 9 |
| STAT3 | signal transducer and activator of transcription 3 |
| TEAD | TEA domain transcription factor |
| TIMP2/3 | tissue inhibitor of metalloproteinases 2/3 |
| TNRC6 | trinucleotide repeat containing 6A |
| TP53 | tumor protein p53 |
| TUSC2 | tumor suppressor 2, mitochondrial calcium regulator |
| TWIST1 | twist family bHLH transcription factor 1 |
| UCA1 | urothelial cancer associated 1 |
| VEGFA | vascular endothelial growth factor A |
| VEGFR2 | kinase insert domain receptor |
| VIM | vimentin |
| YAP1 | Yes associated protein 1 |
| YY1 | Yin Yang 1 transcription factor |
| ZEB1/2 | zinc finger E-box binding homeobox 1/2 |