Table 5. 111 variants: Fraction of top variants in exome chip study retrieved with imputation of HapMap study.
MAF | |||
---|---|---|---|
5 − 50% | 1 − 5% | 0 − 1% | |
0.7-1 | 65% (49/75) | 50% (4/8) | - |
0.3-0.7 | 67% (2/3) | 0% (0/17) | 0% (0/3) |
0-0.3 | - | - | 0% (0/5) |
This table presents summary statistics imputation results, limited to 111 variants identified as “novel” by [13]. We summarised the results according to their allele frequency and imputation quality category. For each subgroup we calculated the fraction of top exome variants that had a P-value ≤ 0.05/111 with summary statistics imputation.