Table 1.

Differentially expressed major flowering pathway genes in both chilled flower buds (CB) [vs nonchilled flower buds (NB)] and late-pink buds (LPB) (vs CB) in ‘Legacy’. LogFC for chilled buds: Log₂(CB/NB). LogFC for late-pink buds: Log₂(LPB/CB)

Arabidopsis_ID|Vc_transcript_ID	LogFC for chilled buds	LogFC for late-pink buds	FDR for chilled buds	FDR for late-pink buds	e-value_to_blast	Gene_name	Annotation_by_Trinotate	Query_PmDAMs
AT5G60910.1|c77424_g2_i2	1.0	2.2	6E-03	3E-19	9E-44	FUL, AGL8	AGL11_ARATH
AT1G69120.1|c92021_g1_i1	−0.6	−1.8	4E-02	5E-15	1E-80	AP1, AGL7	AGL8_SOLTU
AT5G60910.1|c88116_g1_i1	−0.4	0.8	4E-02	1E-10	5E-91	FUL, AGL8	AGL8_SOLTU
AT1G69120.1|c88116_g8_i1	3.2	−5.4	1E-16	2E-59	4E-94	AP1, AGL7	AGL8_SOLTU
AT1G69120.1|c81830_g1_i1	3.5	−2.1	2E-42	4E-24	2E-52	AP1, AGL7	AGL9_PETHY
AT1G69120.1|c88116_g7_i1	3.6	−2.7	3E-33	7E-41	3E-90	AP1, AGL7	AP1_SINAL
AT5G15840.1|c77980_g1_i1	−0.5	0.7	2E-03	3E-10	1E-66	CO, FG	COL2_ARATH
AT5G15840.1|c76265_g1_i1	2.3	−2.5	2E-09	6E-14	4E-30	CO, FG	COL2_ARATH
AT5G60910.1|c79125_g1_i1	−0.3	−1.1	4E-02	2E-13	2E-35	FUL, AGL8	DEFA_ANTMA
AT5G60910.1|c67980_g1_i1	3.4	−4.6	7E-46	2E-70	5E-36	FUL, AGL8	DEFA_ANTMA
AT5G61850.1|c96427_g2_i1	−2.4	−5.7	4E-13	4E-24	7E-102	LFY, LFY3	FLO_ANTMA
AT5G61850.1|c96427_g2_i2	−2.1	−6.7	2E-13	9E-31	3E-98	LFY, LFY3	FLO_ANTMA
AT1G65480.1|c84088_g2_i3	−0.9	−4.5	2E-02	7E-12	5E-95	FT	HD3A_ORYSJ
AT1G65480.1|c84088_g2_i5	1.1	−4.9	1E-03	9E-28	1E-94	FT	HD3A_ORYSJ
AT1G26310.1|c77146_g1_i1	4.9	−3.1	2E-57	9E-37	2E-56	CAL, AGL10	MADS6_ORYSJ
AT2G45660.1|c89673_g3_i1	2.6	−4.0	1E-09	3E-15	3E-53	SOC1, AGL20	SOC1_ARATH
AT2G45660.1|c86010_g2_i1	3.9	−4.4	1E-08	2E-09	2E-54	SOC1, AGL20	SOC1_ARATH
AT2G22540.1|c91377_g1_i7	1.0	−1.6	3E-02	1E-03	5E-69	SVP, AGL22	SVP_ARATH
AT2G22540.1|c90829_g2_i1	1.2	−1.2	1E-03	5E-04	4E-77	SVP, AGL22	SVP_ARATH
AT4G24540.1|c91377_g1_i7	1.0	−1.6	3E-02	1E-03	1E-39	AGL24	SVP_ARATH
AT5G10140.1|c77146_g1_i1	4.9	−3.1	2E-57	9E-37	2E-31	FLC, FLF, AGL25	MADS6_ORYSJ
AT5G10140.1|c88116_g6_i1	4.1	−1.9	5E-91	1E-26	7E-31	FLC, FLF, AGL25	SEP1_ARATH
AT4G18960.1|c77424_g2_i2	1.0	2.2	6E-03	3E-19	1E-72	MAF2, AGL31	AGL11_ARATH	PmDAM1
AT2G14210.1|c80388_g1_i2	3.9	3.2	4E-02	5E-09	3E-79	MAF2, AGL31	MAD23_ORYSJ	PmDAM1
AT5G60910.1|c77146_g1_i1	4.9	−3.1	2E-57	9E-37	7E-54	MAF2, AGL31	MADS6_ORYSJ	PmDAM1
AT4G22950.1|c77424_g2_i2	1.0	2.2	6E-03	3E-19	1E-42	MAF3, AGL70	AGL11_ARATH	PmDAM1
AT4G18960.1|c88293_g3_i1	4.7	−4.7	5E-21	5E-20	5E-59	MAF4	AG_TOBAC
AT5G15800.2|c88116_g6_i1	4.1	−1.9	5E-91	1E-26	2E-87	MAF4	SEP1_ARATH	PmDAM1
AT1G24260.2|c68983_g1_i1	2.5	0.0	3E-06	0E + 00	3E-42	MAF5, AGL68	.
AT5G15800.2|c81830_g1_i1	3.5	−2.1	2E-42	4E-24	3E-89	MAF5, AGL68	AGL9_PETHY	PmDAM1

#N/A: No differential expression