Figure 1. Chromosome level assembly correlation with genetic map and Hi-C data.

a, Rosa chinensis ‘Old Blush’ mature flowers.

b, Representation of chromosome connections between the physical positions on the reconstructed chromosome and genetic map positions (left panel). Scatter plot with dots representing the physical position on the chromosome (x-axis) versus the map position (y-axis). Rho (ρ) is the Pearson correlation coefficient (middle panel). Hi-C intra-chromosomal contact map for each chromosome (right panel). The intensity of pixels represents the count of Hi-C links between 400kb windows on chromosomes on a logarithmic scale. Darker red color indicates higher contact probability