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. 2018 Jun 1;19:426. doi: 10.1186/s12864-018-4809-4

Fig. 1.

Fig. 1

Amycolatopsis phylogeny, core−/pan-genome and average nucleotide identity. a) Maximum likelihood tree based on a MLSA (concatenated sequences of atpD, clpB, gapA, gyrB, nuoD, pyrH and rpoB) of 43 members of the genus Amycolatopsis. Bootstrap values were calculated from 500 bootstrap repetitions. b) Flower diagram representing the core-, accessory- and pan-genome of the Amycolatopsis strains. c) Heatmap displaying relationships between Amycolatopsis strains based on ANIm values