Table 3.
Normal Mode Analysis Results for Respective Complexes of the Enterovirus 71 Viral Capsid
| Complex | Number of Residues | Total Number of Nontrivial Modes (3N-6)a | Mode Identified to Overlap Capsid Expansion | Maximum Overlap |
|---|---|---|---|---|
| Protomer | 842 | 2520 | 1 | 0.24 |
| 6a | 0.18 | |||
| Protomer CG4 | 209 | 621 | 1 | 0.34 |
| 4 | 0.28 | |||
| Pentamer | 4210 | 12,624 | 3b∗ | 0.71∗ |
| Pentamer CG4 | 1045 | 3129 | 3∗ | 0.71∗ |
| Pentamer interface | 12,630 | 37,884 | 17c∗ | 0.71∗ |
| Pentamer interface CG4 | 3135 | 9399 | 17∗ | 0.70∗ |
| Capsid CG4 | 12,540 | 37,614 | 27d | 0.67 |
| 75e∗ | 0.53∗ | |||
| 113f | 0.20 | |||
| combination | 0.80 | |||
| Capsid CG12 | 4320 | 12,954 | 27 | 0.64 |
| 75∗ | 0.60∗ | |||
| 121 | 0.20 | |||
| combination | 0.77 |
NMA results for respective complexes of the EV71 viral capsid. Maximum overlapping modes with capsid expansion, as determined from the experimental structures, were identified. A common mode was identified across the pentamer, pentamer interface complex, and coarse-grained capsid structures. This common mode is indicated with an asterisk. Movies of the respective capsid complexes are in the Supporting Material.