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. 2018 Mar 1;114(4):822–838. doi: 10.1016/j.bpj.2017.12.021

Table 3.

Normal Mode Analysis Results for Respective Complexes of the Enterovirus 71 Viral Capsid

Complex Number of Residues Total Number of Nontrivial Modes (3N-6)a Mode Identified to Overlap Capsid Expansion Maximum Overlap
Protomer 842 2520 1 0.24
6a 0.18
Protomer CG4 209 621 1 0.34
4 0.28
Pentamer 4210 12,624 3b 0.71
Pentamer CG4 1045 3129 3 0.71
Pentamer interface 12,630 37,884 17c 0.71
Pentamer interface CG4 3135 9399 17 0.70
Capsid CG4 12,540 37,614 27d 0.67
75e 0.53
113f 0.20
combination 0.80
Capsid CG12 4320 12,954 27 0.64
75 0.60
121 0.20
combination 0.77

NMA results for respective complexes of the EV71 viral capsid. Maximum overlapping modes with capsid expansion, as determined from the experimental structures, were identified. A common mode was identified across the pentamer, pentamer interface complex, and coarse-grained capsid structures. This common mode is indicated with an asterisk. Movies of the respective capsid complexes are in the Supporting Material.