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Functional Predictions from Different Methods
Valley scores for four activating histone marks and DNase, posterior probabilities from FUN-LDA, GenoSkyline, and ChromHMM, and segmentations from ChromHMM, IDEAS, and Segway are shown in 2 kb windows centered around the lead SNPs. For clarity, we highlight in the segmentations only the type of states we consider functional (enhancer states in red and promoter states in blue) for the different segmentation approaches.
