Bacterial and Virus Strains |
E. coli BL21 (DE3) – CAHS 77580 |
This study |
NA |
E. coli BL21 (DE3) – CAHS 89226 |
This study |
NA |
E. coli BL21 (DE3) – CAHS 94063 |
This study |
NA |
E. coli BL21 (DE3) – CAHS 106094 |
This study |
NA |
E. coli BL21 (DE3) – CAHS 107838 |
This study |
NA |
Chemicals, Peptides, and Recombinant Proteins |
Trizol |
ThermoFisher |
15596026 |
Roche cOmplete EDTA-free protease inhibitor tablet |
Sigma-Aldrich |
4693159001 |
Lactate dehydrogenase |
Sigma-Aldrich |
10127230001 |
BSA |
Sigma-Aldrich |
B4287-25G |
D-Trehalose |
Sigma-Aldrich |
6138-23-4 |
NADH |
Sigma-Aldrich |
10128023001 |
Critical Commercial Assays |
RNeasy Mini Kit |
QIAGEN |
74104 |
TruSeq kit |
Illumina |
RS-122-2001 |
MasterPure RNA purification kit |
Epicenter |
MCR85102 |
Deposited Data |
Assemblies generated in this study |
NCBI BioProject database |
PRJNA369152 |
Raw RNaseq reads generated in this study |
NCBI Search Read Archive |
SRR5217912, SRR5217911, SRR5217848, SRR5217652, SRR5217467 |
Experimental Models: Organisms/Strains |
Hypsibius dujardini |
Sciento |
Z151 |
Paramacrobiotus richtersi |
Collected for study |
N/A |
S. cerevisiae CAHS 94205 |
This study |
N/A |
S. cerevisiae CAHS 77580 |
This study |
N/A |
S. cerevisiae CAHS 68135 |
This study |
N/A |
S. cerevisiae CAHS 94063 |
This study |
N/A |
S. cerevisiae CAHS 106094 |
This study |
N/A |
Software and Algorithms |
Trinity |
Haas et al. (2013) |
https://github.com/trinityrnaseq/trinityrnaseq/wiki |
RSEM |
Li and Dewey (2011) |
http://deweylab.github.io/RSEM/ |
edgeR |
Robinson et al. (2010) |
https://bioconductor.org/packages/release/bioc/html/edgeR.html |
CEGMA |
Parra et al. (2007) |
https://github.com/KorfLab/CEGMA_v2/ |
Excel 2008 for Mac V12.3 |
Microsoft |
NA |
Other |
Tzero aluminum pans |
Fisher |
NC9553081 |