Table 1.
Genomic features and metadata of bacterial genomes used in this study.
| Repository ID | MRSN 1319 | MRSN 7339 | MRSN 11489 | ATCC 55730 | BEI HM-118 | ATCC 43734 |
|---|---|---|---|---|---|---|
| Organism | K. pneumoniae | A. baumannii | E. hormaechei | L. reuteri SD2112 | S. epidermidis SK135 | C. jeikeium |
| Accession | JSVB00000000 | JPHV00000000 | JTEP00000000 | CP002844 | ADEY00000000 | ACYW00000000 |
| Group | MDRO | MDRO | MDRO | Commensal | Commensal | Commensal |
| Origin | wound | wound | wound | breast milk | skin | blood culture |
| Sequencing Technology | Illumina HiSeq. 2000 | Illumina HiSeq. 2000 | Illumina HiSeq. 2000 | Roche 454 | Roche 454 | Roche 454 |
| Finishing Status† | IHQD | IHQD | IHQD | Finished | HQD | HQD |
| Average Coverage | 79.23× | 115.46× | 94.99× | 63× | 26× | 35× |
| #Contigs | 52 | 34 | 28 | 5 | 33 | 93 |
| Contig N50 | 392,725 | 246,634 | 332,009 | na | na | na |
| Average Contig Length (bp) | 105,180 | 116,337 | 165,823 | 463,368 | 76,304 | 26,091 |
| Max. Contig Length (bp) | 765,691 | 847,614 | 652,496 | 2,264,399 | 751,210 | 161,413 |
| Total Genome size (bp) | 5,469,353 | 3,955,466 | 4,643,032 | 2,316,838 | 2,518,045 | 2,426,461 |
| Total G + C% | 57.31 | 39.09 | 55.30 | 39.04 | 32.24 | 61.63 |
| #Proteins | 5,430 | 3,787 | 4,513 | 2,300 | 2,395 | 2,224 |
| #Plasmid contigs | 23 | 2 | 3 | 4 | nd | nd |
| References | This study | Chan et al., 2015 | This study | Spinler et al., 2014 | BEI Resources | Jackman et al., 1987 |
†Improved High-Quality Draft (IHQD); High-Quality Draft (HQD).
na = Not available or applicable.
nd = Not determined.