Table 5.
Seven eSSR primers optimized and used to assess population genetics in kudzu accessions
Locus | Sequence | Dye/Tail | SSR | Length (bp) |
---|---|---|---|---|
PP2 | F: 5′-TAG GAG TGC AGC AAG CAT ATG CCG CGG ATC TTT GAA AG-3’ | VIC /M13A | AAC | 100–130 |
R: 5’-CAA ATT GGC CCT GTC CCA AT-3’ | n/a | |||
PP4 | F: 5′-TGT AAA ACG ACG GCC AGT CAT GCC CAC GTG CTT CAT AG-3’ | 6FAM/M13 | GCT | 100–140 |
R: 5’-CTC TCA GAT CCA GGC CCA AA-3’ | n/a | |||
PP10 | F: 5′-TAG GAG TGC AGC AAG CAT GGC ATG TAG ATC CAG CTA AA-3’ | VIC/M13A | GGT | 310–330 |
R: 5′-TTG ACA GAT TTC TGA TTC TTG G-3’ | n/a | |||
PP13 | F: 5′-TAG GAG TGC AGC AAG CAT GAT TGA GCA GGC ACG AGA AC-3’ | VIC/M13A | GCT | 270–300 |
R: 5’-CAG TAG CAG GCA TGT GTT GG-3’ | n/a | |||
PL1 | F: 5’-CAC TGC TTA GAG CGA TGC TGT AAG CGT TCG TTC GTT GG-3’ | PET/M13B | CTT | 400–440 |
R: 5’-TCA ACC TGG TGC TCT CTG AC-3’ | n/a | |||
PL7 | F: 5′-TGT AAA ACG ACG GCC AGT AGT GGC CTT GCT CTT CTT CC-3’ | 6FAM/M13 | CTT | 80–140 |
R: 5′-GTG TCA TCT CAG CAC GTT GG-3’ | n/a | |||
PL11 | F: 5′-TGT AAA ACG ACG GCC AGT TGG CAT CAT CCT TCA ACC AC-3’ | 6FAM/M13 | ACC | 300–330 |
R: 5′-ATT CGG GAA TAG TGG GTG GG-3’ | n/a |
F forward primer, R reverse primer. Dyes VIC: 2′-chloro-7′phenyl-1,4-dichloro-6-carboxy-fluorescein; 6FAM: 6-carboxyfluorescein; PET: chemical structure currently unpublished as proporietary to Lifetech. Tail: see Culley et al. [19] for information about M13, M13A, and M13B