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. 2018 Jun 5;19:439. doi: 10.1186/s12864-018-4798-3

Table 5.

Seven eSSR primers optimized and used to assess population genetics in kudzu accessions

Locus Sequence Dye/Tail SSR Length (bp)
PP2 F: 5′-TAG GAG TGC AGC AAG CAT ATG CCG CGG ATC TTT GAA AG-3’ VIC /M13A AAC 100–130
R: 5’-CAA ATT GGC CCT GTC CCA AT-3’ n/a
PP4 F: 5′-TGT AAA ACG ACG GCC AGT CAT GCC CAC GTG CTT CAT AG-3’ 6FAM/M13 GCT 100–140
R: 5’-CTC TCA GAT CCA GGC CCA AA-3’ n/a
PP10 F: 5′-TAG GAG TGC AGC AAG CAT GGC ATG TAG ATC CAG CTA AA-3’ VIC/M13A GGT 310–330
R: 5′-TTG ACA GAT TTC TGA TTC TTG G-3’ n/a
PP13 F: 5′-TAG GAG TGC AGC AAG CAT GAT TGA GCA GGC ACG AGA AC-3’ VIC/M13A GCT 270–300
R: 5’-CAG TAG CAG GCA TGT GTT GG-3’ n/a
PL1 F: 5’-CAC TGC TTA GAG CGA TGC TGT AAG CGT TCG TTC GTT GG-3’ PET/M13B CTT 400–440
R: 5’-TCA ACC TGG TGC TCT CTG AC-3’ n/a
PL7 F: 5′-TGT AAA ACG ACG GCC AGT AGT GGC CTT GCT CTT CTT CC-3’ 6FAM/M13 CTT 80–140
R: 5′-GTG TCA TCT CAG CAC GTT GG-3’ n/a
PL11 F: 5′-TGT AAA ACG ACG GCC AGT TGG CAT CAT CCT TCA ACC AC-3’ 6FAM/M13 ACC 300–330
R: 5′-ATT CGG GAA TAG TGG GTG GG-3’ n/a

F forward primer, R reverse primer. Dyes VIC: 2′-chloro-7′phenyl-1,4-dichloro-6-carboxy-fluorescein; 6FAM: 6-carboxyfluorescein; PET: chemical structure currently unpublished as proporietary to Lifetech. Tail: see Culley et al. [19] for information about M13, M13A, and M13B