Table 4.
Inflation estimates (b1) of genomic prediction of 9 traits using different models using all deletions and biallelic duplications (173 CNVs)
| b1(dEBV,DGV) | ||||||
|---|---|---|---|---|---|---|
| Trait | BayesA | BayesA+CNV | BayesB | BayesB+CNV | GBLUP | GBLUP+CNV |
| BW | 1.06 | 0.96 | 0.78 | 0.95 | 1.04 | 0.93 |
| CW | 1.78 | 1.52 | 1.19 | 1.23 | 0.90 | 1.09 |
| CY | 1.82 | 1.74 | 1.44 | 1.31 | 1.12 | 1.18 |
| MW | 1.56 | 1.39 | 1.10 | 0.90 | 0.94 | 0.96 |
| MY | 1.28 | 1.33 | 1.15 | 1.09 | 1.02 | 1.15 |
| PW | 1.37 | 1.41 | 1.21 | 1.12 | 1.12 | 1.22 |
| PWG | 0.84 | 0.91 | 0.90 | 0.88 | 0.89 | 0.92 |
| PY | 1.24 | 1.19 | 1.23 | 1.14 | 1.11 | 1.09 |
| WG | 0.83 | 0.92 | 0.86 | 0.82 | 0.90 | 0.92 |