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. 2018 Mar 24;8(3):339–348. doi: 10.1016/j.apsb.2018.02.001

Figure 3.

Fig. 3

(A) The interactions between the DIR sulfonate and M8VL show the two orientations of the bound DIR in the crystal structure (green and yellow), and the A (light blue) and B (blue) VL chains. CDR2 is colored pink. SerB56 and ArgA53 also sample two alternate conformations. One sulfonate (top) has more interactions with the protein than the alternate (bottom) sulfonate. Adapted with permission from Ref. 20. Copyright (2012) American Chemical Society. (B) MG interactions with L5*. Spatial distribution of amino acid side chains that contact MG. Shown are contacting side chains from both VL A (black letters) and VL B (red letters) that comprise a set of pairwise symmetrical locations and orientations. Adapted with permission from Ref. 21.