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Systematic error in short-read based SV calling. A) An example of a putative translocation identified in the short-read data (top alignments) that overlaps an insertion detected by both PacBio (middle) and Oxford Nanopore sequencing (bottom). B) An example of a putative inversion identified in the short-read data (top) that overlaps an insertion detected by both PacBio (middle) and Oxford Nanopore reads (bottom)
