Table 2.
compounds | C-scorea | crash scoreb | polar scorec | D-scored | PMF scoree | G-scoref | Chem scoreg |
---|---|---|---|---|---|---|---|
3a | 8.81 | −3.91 | 3.79 | −133.638 | −88.498 | −261.677 | −35.782 |
3b | 7.77 | −3.63 | 2.42 | −144.867 | −91.593 | −269.639 | −34.697 |
3c | 9.49 | −1.85 | 4.38 | −129.340 | −96.820 | −218.849 | −36.228 |
3d | 9.00 | −2.58 | 3.45 | −142.592 | −94.903 | −276.827 | −44.811 |
3e | 10.30 | −4.16 | 4.39 | −149.322 | −101.748 | −189.113 | −38.703 |
3f | 6.84 | −1.18 | 1.82 | −127.125 | −50.500 | −157.134 | −20.523 |
3g | 10.10 | −3.91 | 3.90 | −149.613 | −83.797 | −197.174 | −36.644 |
3h | 7.05 | −6.13 | 2.60 | −147.745 | −49.089 | −296.674 | −32.790 |
3i | 10.33 | −0.89 | 1.84 | −132.981 | −76.170 | −221.498 | −31.537 |
ciprofloxacin | 5.01 | −2.26 | 1.91 | −87.704 | −69.857 | −187.231 | −21.485 |
aC-Score (consensus score) integrates a number of popular scoring functions for ranking the affinity of ligands bound to the active site of a receptor and reports the output of total score.
bCrash score revealing the inappropriate penetration into the binding site. Crash scores close to 0 are favourable. Negative numbers indicate penetration.
cPolar score indicating the contribution of the polar interactions to the total score. The polar score may be useful for excluding docking results that make no hydrogen bonds.
dD-score for charge and van der Waals interactions between the protein and the ligand.
ePMF score indicating the Helmholtz free energies of interactions for protein-ligand atom pairs (potential of mean force, PMF).
fG-score showing hydrogen bonding, complex (ligand–protein) and internal (ligand–ligand) energies.
gChem score points for H-bonding, lipophilic contact and rotational entropy, along with an intercept term.