Table 1. Processing times for Gepard, r2cat and D-GENIES.
| Reference genome | Query sequence | Gepard | r2cat | D-Genies |
|---|---|---|---|---|
| E. coli K121 (5 Mb) | E. coli O157:H74 (5.5 Mb) | 18 s | 5 s | 0.7 s |
| Asp. niger1 (35 Mb) | Asp. terreus1 (30 Mb) | 3 min 25 s | 45 s | 5 s |
| Sol. lyco.2 (100 Mb) | Sol. tub.2 (90 mb) | 31 min 29 s | 13 min5 | 4 min |
| Drosophila3 (146 Mb) | Drosophila3 (146 Mb) | 53 min 21 s | 32 min5 | 3 min |
| A. thaliana1 (122 Mb) | A. lyrata1 (210 Mb) | 1 h 23 min | 55 min5 | 1 min |
Notes:
1
Ensembl 38 datasets.
2
Ensembl 38 datasets, Chromosome 1.
3
Ensembl 91 datasets.
4
Ensemble 38 datasets, str sakai.
5
Time without display generation: display time is high and the interface becomes buggy (memory limit is reached).