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. 2018 Jun;28(6):901–909. doi: 10.1101/gr.228718.117

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© 2018 Pu et al.; Published by Cold Spring Harbor Laboratory Press

This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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Figure 5. — Known pseudo-SDs formed by common repeats and reverse palindromes in the hg19 assembly of the human genome. (A) A known SD starting at position 64,382,311 on Chromosome 18 (length 6343 bp) and at position 91,148,760 on Chromosome 4 (length 6353 bp) contains only ∼300 bp of unique genomic sequence (shown in black). This SD contains an L1PA3 repeat (shown in blue) from the L1 repeat family of length ∼6000 bp. (B) A known SD starting at position 221,647,372 on Chromosome 1 (length 2061 bp) represents a reverse palindrome.