Bacterial and Virus Strains |
|
PGEM7-Dunlop (BK virus Dunlop strain) |
Laboratory of Michael Imperiale, University of Michigan |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
GT1b oligosaccharide |
CarboSynth |
Cat# OO16323 |
Heparin |
Sigma |
Cat# 4784 |
|
Deposited Data |
|
Density map of BKV in complex with GT1b |
This paper |
Electron Microscopy Data Bank: EMD-3944 |
Density map of BKV in complex with heparin |
This paper |
Electron Microscopy Data Bank: EMD-3945 |
Density map of unliganded BKV |
This paper |
Electron Microscopy Data Bank: EMD-3946 |
Density map of reduced BKV |
This paper |
Electron Microscopy Data Bank: EMD-4212 |
Coordinates for the BKV-GT1b asymmetric unit |
This paper |
PDB: 6ESB
|
|
Experimental Models: Cell Lines |
|
Vero cells |
ATCC |
CCL-81 RRID: CVCL_0059 |
|
Software and Algorithms |
|
RELION 2.0 |
(Kimanius et al., 2016, Scheres, 2012) |
https://www2.mrc-lmb.cam.ac.uk/relion |
MOTIONCOR2 |
(Zheng et al., 2017) |
http://msg.ucsf.edu/em/software/motioncor2.html |
gCTF |
(Zhang, 2016) |
https://www.mrc-lmb.cam.ac.uk/kzhang/Gctf/ |
UCSF Chimera |
(Pettersen et al., 2004) |
https://www.cgl.ucsf.edu/chimera/ RRID: SCR_004097 |
Coot |
(Emsley et al., 2010) |
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ RRID: SCR_014222 |
Phenix |
(Headd et al., 2012) |
https://www.phenix-online.org/ RRID: SCR_014224 |
PDBePISA |
(Krissinel and Henrick, 2007) |
http://www.ebi.ac.uk/pdbe/pisa/ RRID: SCR_015749 |
PyMOL |
(The PyMOL Molecular Graphics System, Version 2.0, Schrödinger, LLC) |
https://pymol.org/ RRID: SCR_000305 |