Table 4.
Differentially expressed immune response genes.
| Specific for SW1 | fc | |
|---|---|---|
| MHC class I (UBA) mRNA, UBA∗0901 allele | 362 | |
| T-cell receptor alpha chain V region 2B4 precursor putative mRNA | 7.19 | |
| MHC class I antigen (UBA) mRNA, UBA∗4001 allele | 6.61 | |
| Macrophage migration inhibitory factor putative mRNA | Inf | |
| MHC class I antigen (Sasa-UBA) mRNA, Sasa-UBA∗0902 allele | Inf | |
| BOLA class I histocompatibility antigen, alpha chain BL3-7 precursor putative mRNA | 0.154 | |
| MHC class I (UBA) mRNA, UBA∗0501 allele | 0.131 | |
| MHC class I mRNA | 0.0467 | |
| MHC class I (UBA) mRNA, UBA∗0701 allele | 0.00130 | |
| Specific for SW2 | fc | |
| MHC class I antigen (Sasa-UBA) mRNA, Sasa-UBA∗3701 allele | 288 | |
| H-2 class II histocompatibility antigen gamma chain putative mRNA | 137 | |
| MHC class II antigen alpha chain (Sasa-DAA) mRNA | 39.7 | |
| MHC class II alpha mRNA | 18.6 | |
| Tumor necrosis factor receptor superfamily member 11B precursor putative mRNA | 4.14 | |
| CD209 antigen-like protein E putative mRNA | 3.21 | |
| Ig kappa chain V-IV region Len putative mRNA | 2.86 | |
| partial mRNA for MHC class II antigen beta chain (DAB gene) | Inf | |
| MHC class I antigen (Sasa-UBA) mRNA, Sasa-UBA∗1402 allele | Inf | |
| Class I histocompatibility antigen, F10 alpha chain precursor putative mRNA | 0.254 | |
| MHC class I (UBA) mRNA, UBA∗0501 allele | 0.131 | |
| MHC class I antigen (Sasa-UBA) mRNA, Sasa-UBA∗3501 allele | 0.125 | |
| Proliferating cell nuclear antigen putative mRNA | 0.113 | |
| MHC class I (UBA) mRNA, UBA∗1501 allele | 0.00567 | |
| Anamorsin putative mRNA | 0 | |
| Common SW1-SW2 | SW1 (fc) | SW2 (fc) |
| MHC class II antigen beta chain (DAB gene) | 309 | 171 |
| MHC-Sasa class II (clone c144) | 54.7 | 7.76 |
| MHC class I (UBA) mRNA, UBA∗0201 allele | 36.8 | 35.0 |
| MHC class I antigen (Sasa-UBA) mRNA | Inf | Inf |
| MHC class I antigen (Sasa-UBA) mRNA, Sasa-UBA∗0202 allele | Inf | Inf |
| MHC class II antigen alpha chain (Sasa-DAA) mRNA | Inf | Inf |
| HLA class II histocompatibility antigen, DQW1.1 beta chain precursor putative mRNA | Inf | Inf |
| CD209 antigen-like protein E putative mRNA | Inf | Inf |
| MHC class I (UBA) mRNA, UBA∗1401 allele | 0.350 | 0.351 |
| MHC-Sasa class II B (clone c22) | 0.276 | 0.003 |
| MHC class I antigen (Sasa-UBA) mRNA, Sasa-UBA∗3901 allele | 0.00349 | 0 |
Differentially expressed immune response genes at P < 0.05, specific for the comparison SW1 vs. FMC, SW2 vs. FMC and those in common as a result of strategy 1; Mapping reads against NCBI Salmo salar reference. Expression is given by fold change (fc) and Inf indicates that expression was unique for the particular seaweed.