Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2018 Mar 27;2:136–140. doi: 10.1016/j.isci.2018.03.017

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© 2018 The Authors

This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

PMC Copyright notice

Microscope Setup and OpenHiCAMM Results

(A) Microscope with motorized stage (on the right) and the automated slide loader (on the left).

(B) Main dialog box for OpenHiCAMM, showing the workflow storage directory in use, tabs allowing user configuration options and access to reports and logs. See also Figure S10–S14.

(C and D) Excerpts of the OpenHiCAMM report. (C) Image of a processed slide, stitched by stage position and the automated detection of regions of interest (ROI) shown boxed in red. (D) Screenshot from the report page showing the results for one detected ROI; (left) the image at 5× magnification, (middle) the image at 20× magnification superimposed by relative position, (right) the final image at 20× magnification stitched with the Fiji's algorithm (red arrows indicate the stitching position). See also Figure S1.