Table 4.
Gene | Chr | Position | Band | Sun-exposed Skin | Non-Sun-exposed Skin | SKAT | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
z-score | p-value | N Variants/Model N† | z-score | p-value | N Variants/Model N† | p-value | N‡ | ||||
SLPI | 20 | 43881680–43881682 | 20q13.12 | 2.96 | 0.003 | 1/47 | −2.06 | 0.039 | 3/77 | 0.004 | 1 |
ZNF337 | 20 | 25655765–25666737 | 20p11.1 | −2.65 | 0.008 | 1/82 | −2.65 | 0.008 | 1/28 | 0.032 | 4 |
ARFIP1 | 4 | 153791955–153802203 | 4q31.3 | −2.21 | 0.027 | 1/15 | −2.21 | 0.027 | 1/14 | 0.027 | 1 |
TMEM8B | 9 | 35829222–35854844 | 9p13.3 | −2.53 | 0.011 | 1/15 | NA | NA | NA | 0.004 | 5 |
TOR3A | 1 | 179051112–179065129 | 1q25.2 | −2.25 | 0.025 | 1/20 | NA | NA | NA | 0.043 | 2 |
MLXIPL | 7 | 73010191–73020440 | 7q11.23 | −2.62 | 0.009 | 3/16 | −2.76 | 0.006 | 5/48 | 0.679 | 6 |
NAAA | 4 | 76836110–76862005 | 4q21.1 | 2.73 | 0.006 | 4/46 | 2.63 | 0.009 | 3/31 | 0.263 | 8 |
ALDH16A1 | 19 | 49956613–49973578 | 19q13.33 | −2.70 | 0.007 | 3/21 | −2.30 | 0.022 | 2/58 | 0.423 | 14 |
CDRT4 | 17 | 15341161–15341332 | 17p12 | 2.56 | 0.010 | 2/23 | 2.67 | 0.008 | 1/31 | 0.234 | 13 |
Boldface represents p-values < 0.05.
Number of SNPs included in the prediction model for that gene available in the summary statistics/Number of SNPs used to construct the prediction model for the gene in the tissue of interest using the GTEx data.
Number of SNPs with frequency <0.05 in the gene of interest and included in the analysis. NA = gene was not available in this analysis