FIG. 3.
HIV-1 subtype assignment was performed using the bootscanning method within REGA v3 and confirmed using COMET HIV-1 v2.2 and jpHMM. Results indicate the percentage of a particular subtype represented in the sample (n = 846 sequences). COMET, Context-based Modeling for Expeditious Typing; jpHMM, jumping profile hidden Markov model.
