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. 2018 Jun 1;34(6):507–516. doi: 10.1089/aid.2017.0305

FIG. 3.

FIG. 3.

HIV-1 subtype assignment was performed using the bootscanning method within REGA v3 and confirmed using COMET HIV-1 v2.2 and jpHMM. Results indicate the percentage of a particular subtype represented in the sample (n = 846 sequences). COMET, Context-based Modeling for Expeditious Typing; jpHMM, jumping profile hidden Markov model.