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. 2018 Apr 18;4(5):e000176. doi: 10.1099/mgen.0.000176

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© 2018 The Authors

This is an open access article under the terms of the Creative Commons Attribution 4.0 International License, which permits unrestricted use, distribution and reproduction in any medium, provided the original author and source are credited.

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Fig. 1. — Distribution of TTT SBPs in the genomes of bacteria. The outer circle represents the number of TTT SBPs present in each genome, using a log₂ scale. The tree was inferred using 16S rRNA sequences retrieved from the genome of each organism, and aligned using MAFFT v7 [37]. A maximum-likelihood tree was inferred using RAxML v8.2.11 [38] under the GTRCAT model, with 100 bootstrap pseudoreplicates. Bootstrap support values are indicated on nodes of major lineages when higher than 50 % (inclusive; filled circles) or lower than 50 % (open circle). Major branches are coloured as indicated in the key. Non-coloured branches are minor lineages of Bacteria.