TABLE 1:
Gene Ontology cellular compartment analysis of significant genes from RNA sequencing (top 25).
HyT36 | Nigericin | Xyloside | |||||||
---|---|---|---|---|---|---|---|---|---|
Rank | Term ID | Term | logP | Term ID | Term | logP | Term ID | Term | logP |
1 | GO:0005794 | Golgi apparatus | −7.27 | GO:0044424 | Intracellular part | −94.92 | GO:0005622 | Intracellular | −122.98 |
2 | GO:0012505 | Endomembrane system | −6.92 | GO:0005622 | Intracellular | −91.58 | GO:0044424 | Intracellular part | −119.21 |
3 | GO:0044420 | Extracellular matrix part | −6.70 | GO:0043229 | Intracellular organelle | −65.17 | GO:0043229 | Intracellular organelle | −87.34 |
4 | GO:0005719 | Nuclear euchromatin | −6.69 | GO:0043226 | Organelle | −59.93 | GO:0043226 | Organelle | −83.98 |
5 | GO:0005581 | Collagen trimer | −6.35 | GO:0043231 | Intracel. membrane-bd. orgl. | −57.98 | GO:0043227 | Membrane-bd. orgl. | −78.50 |
6 | GO:0005604 | Basement membrane | −6.25 | GO:0043227 | Membrane-bd. orgl. | −53.23 | GO:0043231 | Intracel. membrane-bd. orgl. | −78.05 |
7 | GO:0000791 | Euchromatin | −6.19 | GO:0005737 | Cytoplasm | −43.40 | GO:0005737 | Cytoplasm | −67.65 |
8 | GO:0030127 | COPII vesicle coat | −5.72 | GO:0044444 | Cytoplasmic part | −39.09 | GO:0044446 | Intracellular organelle part | −40.63 |
9 | GO:0043227 | Membrane-bd. orgl. | −5.32 | GO:0044446 | Intracellular organelle part | −36.24 | GO:0044444 | Cytoplasmic part | −40.24 |
10 | GO:0032587 | Ruffle membrane | −5.31 | GO:0044422 | Organelle part | −34.27 | GO:0044422 | Organelle part | −38.25 |
11 | GO:0005578 | Proteinaceous ECM | −5.29 | GO:0005829 | Cytosol | −33.08 | GO:0044464 | Cell part | −38.00 |
12 | GO:0044424 | Intracellular part | −5.25 | GO:0044464 | Cell part | −28.90 | GO:0005623 | Cell | −37.80 |
13 | GO:0005783 | Endoplasmic reticulum | −5.10 | GO:0005623 | Cell | −28.78 | GO:0005634 | Nucleus | −34.62 |
14 | GO:0005622 | Intracellular | −4.66 | GO:0031981 | Nuclear lumen | −22.50 | GO:0070013 | Intracellular organelle lumen | −23.45 |
15 | GO:0005595 | Collagen type XII trimer | −4.62 | GO:0005634 | Nucleus | −22.14 | GO:0044428 | Muclear part | −22.75 |
16 | GO:0005585 | Collagen type II trimer | −4.62 | GO:0070013 | Intracellular organelle lumen | −22.01 | GO:0043233 | Organelle lumen | −21.68 |
17 | GO:0043231 | Intracel. membrane-bd. orgl. | −4.44 | GO:0031974 | Membrane-enclosed lumen | −21.35 | GO:0005856 | Cytoskeleton | −21.39 |
18 | GO:0043226 | Organelle | −4.32 | GO:0043233 | Organelle lumen | −20.85 | GO:0031974 | Membrane-enclosed lumen | −21.09 |
19 | GO:0031012 | Extracellular matrix | −4.16 | GO:0044428 | Nuclear part | −18.23 | GO:0005912 | Adherens junction | −19.99 |
20 | GO:0048770 | Pigment granule | −4.15 | GO:0043228 | Nonmembrane-bd. orgl. | −16.27 | GO:0043228 | Nonmembrane-bd. orgl. | −19.65 |
21 | GO:0042470 | Melanosome | −4.15 | GO:0043232 | Intracel. nonmbr-bd. orgl. | −16.27 | GO:0043232 | Intracel. nonmbr-bd. orgl. | −19.65 |
22 | GO:0044431 | Golgi apparatus part | −3.93 | GO:0005654 | Nucleoplasm | −15.29 | GO:0012505 | Endomembrane system | −18.94 |
23 | GO:0005615 | Extracellular space | −3.83 | GO:0015630 | Microtubule cytoskeleton | −14.40 | GO:0031981 | Nuclear lumen | −18.92 |
24 | GO:0000139 | Golgi membrane | −3.71 | GO:0031090 | Organelle membrane | −12.73 | GO:0005829 | Cytosol | −18.55 |
25 | GO:0030662 | Coated vesicle membrane | −3.65 | GO:0005815 | Microtubule organizing center | −12.21 | GO:0070161 | Anchoring junction | −16.68 |