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. 2018 Jun 1;29(11):1284–1298. doi: 10.1091/mbc.E17-11-0693

TABLE 1:

Gene Ontology cellular compartment analysis of significant genes from RNA sequencing (top 25).

HyT36 Nigericin Xyloside
Rank Term ID Term logP Term ID Term logP Term ID Term logP
1 GO:0005794 Golgi apparatus −7.27 GO:0044424 Intracellular part −94.92 GO:0005622 Intracellular −122.98
2 GO:0012505 Endomembrane system −6.92 GO:0005622 Intracellular −91.58 GO:0044424 Intracellular part −119.21
3 GO:0044420 Extracellular matrix part −6.70 GO:0043229 Intracellular organelle −65.17 GO:0043229 Intracellular organelle −87.34
4 GO:0005719 Nuclear euchromatin −6.69 GO:0043226 Organelle −59.93 GO:0043226 Organelle −83.98
5 GO:0005581 Collagen trimer −6.35 GO:0043231 Intracel. membrane-bd. orgl. −57.98 GO:0043227 Membrane-bd. orgl. −78.50
6 GO:0005604 Basement membrane −6.25 GO:0043227 Membrane-bd. orgl. −53.23 GO:0043231 Intracel. membrane-bd. orgl. −78.05
7 GO:0000791 Euchromatin −6.19 GO:0005737 Cytoplasm −43.40 GO:0005737 Cytoplasm −67.65
8 GO:0030127 COPII vesicle coat −5.72 GO:0044444 Cytoplasmic part −39.09 GO:0044446 Intracellular organelle part −40.63
9 GO:0043227 Membrane-bd. orgl. −5.32 GO:0044446 Intracellular organelle part −36.24 GO:0044444 Cytoplasmic part −40.24
10 GO:0032587 Ruffle membrane −5.31 GO:0044422 Organelle part −34.27 GO:0044422 Organelle part −38.25
11 GO:0005578 Proteinaceous ECM −5.29 GO:0005829 Cytosol −33.08 GO:0044464 Cell part −38.00
12 GO:0044424 Intracellular part −5.25 GO:0044464 Cell part −28.90 GO:0005623 Cell −37.80
13 GO:0005783 Endoplasmic reticulum −5.10 GO:0005623 Cell −28.78 GO:0005634 Nucleus −34.62
14 GO:0005622 Intracellular −4.66 GO:0031981 Nuclear lumen −22.50 GO:0070013 Intracellular organelle lumen −23.45
15 GO:0005595 Collagen type XII trimer −4.62 GO:0005634 Nucleus −22.14 GO:0044428 Muclear part −22.75
16 GO:0005585 Collagen type II trimer −4.62 GO:0070013 Intracellular organelle lumen −22.01 GO:0043233 Organelle lumen −21.68
17 GO:0043231 Intracel. membrane-bd. orgl. −4.44 GO:0031974 Membrane-enclosed lumen −21.35 GO:0005856 Cytoskeleton −21.39
18 GO:0043226 Organelle −4.32 GO:0043233 Organelle lumen −20.85 GO:0031974 Membrane-enclosed lumen −21.09
19 GO:0031012 Extracellular matrix −4.16 GO:0044428 Nuclear part −18.23 GO:0005912 Adherens junction −19.99
20 GO:0048770 Pigment granule −4.15 GO:0043228 Nonmembrane-bd. orgl. −16.27 GO:0043228 Nonmembrane-bd. orgl. −19.65
21 GO:0042470 Melanosome −4.15 GO:0043232 Intracel. nonmbr-bd. orgl. −16.27 GO:0043232 Intracel. nonmbr-bd. orgl. −19.65
22 GO:0044431 Golgi apparatus part −3.93 GO:0005654 Nucleoplasm −15.29 GO:0012505 Endomembrane system −18.94
23 GO:0005615 Extracellular space −3.83 GO:0015630 Microtubule cytoskeleton −14.40 GO:0031981 Nuclear lumen −18.92
24 GO:0000139 Golgi membrane −3.71 GO:0031090 Organelle membrane −12.73 GO:0005829 Cytosol −18.55
25 GO:0030662 Coated vesicle membrane −3.65 GO:0005815 Microtubule organizing center −12.21 GO:0070161 Anchoring junction −16.68