Table 2.

Summary of male and female linkage maps for sockeye salmon. Arms for each LG were assigned based on centromere location. LG type denotes acrocentric (A) and metacentric (M) LGs. Orthology support is the number of loci shared between sockeye salmon and Chinook salmon for each orthologous relationship. See Brieuc et al. (2014) and Kodama et al. (2014) for additional information on orthologous relationships between Chinook salmon, coho salmon, rainbow trout, and Atlantic salmon. LG arm designations and cM positions for markers in this map do not correspond to Limborg et al. (2015), but markers are named the same

Sockeye LG	Length (cM)		# markers		LG type	Sockeye LG arm	Chinook chromosome	Coho LG	Rainbow trout chromosome	Atlantic salmon chromosome	Orthology support
	Female	Male	Female	Male
So1	82.88	42.57	170	44	A	So1a	Ots26	Co26	Omy22	Ssa21	12
So2	200.06	26.44	290	71	M	So2a	Ots07p	Co05a	Omy07p	Ssa17qb	6
					M	So2b	Ots07q	Co05b	Omy07q	Ssa22	11
So3	155.99	144.96	288	64	M	So3a	Ots03q	Co02b	Omy03q	Ssa25	9
					M	So3b	Ots03p	Co02a	Omy03p	Ssa02p	7
So4	129.91	214.42	272	110	M	So4a	Ots13p	Co17a	Omy18q	Ssa27	10
					M	So4b	Ots20	Co23	Omy05p	Ssa01qb	8
So5	150.6	84.79	246	67	M	So5a	Ots08q	Co15a	Omy25q(Omy29)	Ssa09qb	8
					M	So5b	Ots14p	Co16b	Omy18p	Ssa16qb	7
So6	137.72	101.15	192	79	M	So6a	Ots29	Co11b	Omy15p	Ssa29	5
					M	So6b	Ots21	Co19b	Omy14q	Ssa05p	5
So7	133.68	155.15	235	80	M	So7a	Ots31	Co14b	Omy14p	Ssa14qb	5
					M	So7b	Ots16q	Co17b	Omy09q	Ssa15qb	3
So8	167.79	92.96	186	60	M	So8a	Ots15q	Co09b	Omy21q	Ssa07q	3
					M	So8b	Ots15p	Co09a	Omy21p	Ssa07p	4
So9a	78.12		168		A	So9a	Ots19	Co22	Omy02q	Ssa10qb	13
So9.5a	71.26		116		A	So9.5a	Ots10q	Co30	Omy08q	Ssa14qa	9
So10	169.69	65.33	263	82	M	So10a	Ots06q	Co04b	Omy01q	Ssa18qa	4
					M	So10b	Ots30	Co28	Omy10p	Ssa04q	7
So11	167.61	33.75	226	67	M	So11a	Ots13q	Co15b	Omy27	Ssa20qb	3
					M	So11b	Ots34	Co12b	Omy10q	Ssa08q	5
So12	139.01	84.12	232	82	M	So12a	Ots08p	Co14a	Omy25p	Ssa09qa	12
					M	So12b	Ots10p	Co16a	Omy09p	Ssa18qb	8
So13	143.45	117.44	237	123	M	So13a	Ots18	Co21	Omy04q	Ssa06p	6
					M	So13b	Ots12p	Co08a	Omy11p&q	Ssa20qa	9
So14	161.94	52.96	271	91	M	So14a	Ots23	Co13b	Omy02p	Ssa05q	1
					M	So14b	Ots14q	Co18a	Omy24	Ssa09qc	8
So15	169.46	88.09	293	97	M	So15a	Ots02p	Co01a	Omy17p	Ssa02q	6
					M	So15b	Ots02q	Co01b	Omy17q	Ssa12qb	3
So16	68.61	80.06	126	53	A	So16a	Ots25	Co25	Omy20p+q	SSa08p&Ssa28	7
So17b	138.95	60.53	173	61	M	So17a	Ots01p	Co10a	Omy04p	Ssa23	2
					M	So17b	Ots01p	Co10a	Omy04p	Ssa23	15
So18c	150.19	31.24	239	60	M	So18a	Ots11q	Co07b	Omy19q	Ssa01p	14
					M	So18b	Ots11p	Co07a	Omy19p	Ssa04p	5
So19	107.94	41.62	156	57	M	So19a	Ots33p	Co29	OmySex	Ssa11qa	9
					M	So19b	Ots33q	Co29	OmySex	Ssa11qa	3
So20	144.99	105.9	227	108	M	So20a	Ots22	Co24	Omy16q	Ssa13qa	7
					M	So20b	Ots28	Co27	Omy28	Ssa03p	9
So21	130.01	25.88	189	64	M	So21a	Ots32	Co20b	Omy13p	Ssa12qa	4
					M	So21b	Ots27	Co10b	Omy13q	Ssa06q	3
So22	152.37	69.22	248	82	M	So22a	Ots16p	Co18b	Omy11p	Ssa19qa	6
					M	So22b	Ots09p	Co06a	Omy12p	Ssa13qb	9
So23	152.67	90.55	222	75	M	So23a	Ots17	Co19a	Omy15q	Ssa17qa	3
					M	So23b	Ots24	Co20a	Omy16p	Ssa19qb	5
So24	129.68	181.11	221	96	M	So24a	Ots05q	Co13a	Omy05q	Ssa10qa	9
					M	So24b	Ots05p	Co12a	Omy08p	Ssa15qa	4
So25	84.5	65.86	145	63	A	So25a	Ots06p	Co04a	Omy01p	Ssa16qa	10
So26	159.93	98.08	170	51	A	So26a	Ots09q	Co06b	Omy12q	Ssa03q	4
So27	225.35	12.00	281	77	M	So27a	Ots04q	Co03b	Omy06q	Ssa26	4
					M	So27b	Ots04p	Co03a	Omy06p	Ssa24	13
So28	177.74	14.96	240	108	M	So28a	Ots12q	Co08b	Omy26	Ssa11qb	3
					M	So28b	Ots01q	Co011a	Omy23	Ssa01qa	8
Total	4082	2291	6322	2179							353

^aLG So9 is the sex chromosome for sockeye salmon and was represented by 2 acrocentric LGs in the female (So9, So9.5) and a single metacentric LG in the male (So9). LG So9 in the male contained 107 markers and was 109.5 cM long. LG So9 is denoted as 9A_(X₂) in (Limborg et al. 2015), and So9.5a is denoted as 9B_(X₁).

^bDesignated as acrocentric in Limborg et al. (2015).

^cAssembled as separate LGs in Limborg et al. (2015).