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Estimated vs. simulated recombination rate depending on start-value strategy. Start values have been fixed (EMT0 and EMT05) or adapted (EMDP). Simulated maternal allele frequency and LD: (A) p1 = 0.5, Ddam = 0.05, (B) p1 = 0.5, Ddam = 0.10, (C) p1 = 0.4, Ddam = 0.05, and (D) p1 = 0.4, Ddam = 0.10. In total, 100 half-sibs were simulated with 1,000 replicates.
