Table 6.
Functional annotation categories and statistics for final transcriptome assembly and for a subset of unigenes.
| Trinotate Annotation Statistics | Final transcriptome assembly | Final Transcriptome Subset |
|---|---|---|
| Number of “genes” with ORF | 21,981 | – |
| Number of “Unigenes” with ORF | – | 21,981 |
| Number of transcripts with ORF | 27,772 | 21,981 |
| Transcripts with blastx match NR | 27,426 | 21,707 |
| Transcripts with blastp match NR | 26,780 | 21,215 |
| Transcripts with blastx match Uniref90 | 27,519 | 21,791 |
| Transcripts with blastp match Uniref90 | 26,889 | 21,307 |
| Transcripts with blastx match SwissProt | 23,927 | 18,867 |
| Transcripts with blastp match SwissProt | 24,086 | 19,013 |
| Transcripts with GO terms | 23,550 | 18,567 |
| Transcripts with KeggPathways | 21,247 | 16,911 |
| Transcripts with eggNOG/COG | 21,005 | 16,754 |
| Transcripts with PFAM | 18,885 | 14,557 |