Table 2.

Genes with differentially expressed probesets from matched samples analysis using MAS5 normalization.

Group	Gene symbol	Probesets	*pbefore FDR	*pafter FDR	aFold change
MAP	DEC1	220781_at	4.70E − 06	0.14	3.77
Pre: n = 17	TEF	215673_at	8.61E − 05	0.99	0.24
Post: n = 17	CKAP2	1554264_at	2.79E − 04	0.99	0.30
	CCDC126	228087_at	3.69E − 04	0.99	0.82
	TTLL7	219882_at	3.92E − 04	0.99	2.85
	LRRC37A4P	229821_at	4.77E − 04	0.99	1.28
HEP	GRIK2	215655_at	1.73E − 04	0.99	0.19
Pre: n = 18	PRKCZ	1569748_at	1.82E − 04	0.99	3.16
Post: n = 18	SLC2A5	230705_at	2.42E − 04	0.99	0.37
	LOC284788	1557483_at	2.98E − 04	0.99	0.38
	SCFD1	233229_at	3.04E − 04	0.99	0.60

FDR = false discovery rate.

^*p from ANCOVA after adjusting for batch effect.

^aBatch-adjusted fold change.