Table 2.
Summary of selected lncRNAs.
| Contrast | Cell line | Seq.name | GeneSymbol | Chromosome | Strand | RNA Length | Validation in Original/Additional Cells | Associated Coding Gene (ACG) |
|---|---|---|---|---|---|---|---|---|
| Downregulated | H23 | ENST00000412084 | AC091814.2 | chr12 | − | 979 | H23R | OLR1 |
| Downregulated | H23 | ENST00000563217 | RP11-532F12.5 | chr15 | − | 250 | H23R | DNAJC17 |
| Downregulated | H23 | ENST00000558382 | RP11-522B15.3 | chr15 | + | 501 | Undetermined | NR2F2 |
| Downregulated | A2780 | ENST00000423122 | RP11-65J3.1-002 | chr9 | + | 545 | A2780R & OVCAR3R | IER5L |
| Downregulated | Ovarian | ENST00000444125 | RP11-65J3.1-003 | chr9 | + | 783 | A2780R & OVCAR3R | IER5L |
| Downregulated | OVCAR3 | ENST00000511928 | AC141928.1 | chr4 | − | 4525 | OVCAR3R/A2780CP & OVC13 | LRPAP1 |
| Downregulated | OVCAR3 | ENST00000449073 | AC007040.5 | chr2 | + | 625 | OVCAR3R | FIGLA |
| Downregulated | A2780R&OVCAR3R | ENST00000556071 | RP11-1A16.1 | chr14 | + | 554 | A2780R & OVCAR3R | - |
| Downregulated | A2780R | ENST00000412485 | GS1-600G8.5 | chrX | − | 1497 | A2780R | EGFL6 |
| Downregulated | OVCAR3R | ENST00000453395 | LA16c-83F12.6 | chr22 | − | 624 | OVCAR3R | - |
| Downregulated | OVCAR3R | ENST00000490341 | TUBA4B | chr2 | + | 1380 | OVCAR3R | TUBA4 |
| Downregulated | A2780R&OVCAR3R | ENST00000529081 | CTD-2026G22.1 | chr11 | + | 578 | Undetermined/A2780CP | FOLH1 |
| Downregulated | A2780R | ENST00000455275 | AP001439.2 | chr21 | + | 392 | Undetermined | APP |
| Downregulated | A2780R | ENST00000577848 | RP11-874J12.4 | chr18 | + | 1455 | Undetermined | DLGAP1 |
| Downregulated | AllR_vs_All-S | ENST00000419368 | AC000035.3 | chr22 | − | 570 | H23R & OVCAR3R | NF2 |
| Upregulated | H23 | uc021sxs.1 | AF198444 | chr15 | + | 3890 | H23R & H460R | ALDH1A3 |
| Upregulated | H23 | TCONS_00011636 | XLOC_005125 | chr6 | + | 1366 | H23R | FOXC1 |
| Upregulated | Lung | ENST00000437416 | RP11-100E13.1 | chr1 | − | 403 | H23R | CNIH3 |
| Upregulated | A2780R&OVCAR3R | uc003jsd.1 | BX641110 | chr5 | − | 3720 | A2780R & OVCAR3R/A2780CP | PDE4D |
| Upregulated | A2780R&OVCAR3R | uc010vhb.2 | CRNDE | chr16 | − | 838 | A2780R & OVCAR3R | - |
| Upregulated | A2780R&OVCAR3R | NR_027064 | PLAC2 | chr19 | − | 3693 | A2780R & OVCAR3R | ZNRF4 |
| Upregulated | A2780R&OVCAR3R | ENST00000577279 | RP11-6N17.4 | chr17 | − | 374 | A2780R & OVCAR3R | SP2 |
| Upregulated | A2780R&OVCAR3R | ENST00000450535 | ZNFX1-AS1 | chr20 | + | 1075 | A2780R & OVCAR3R | ZNFX1 |
| Upregulated | OVCAR3R | ENST00000441539 | AC007566.10 | chr7 | + | 395 | A2780R & OVCAR3R/A2780CP | PEX1 |
| Upregulated | A2780R | ENST00000567780 | HOXC-AS3 | chr12 | − | 2816 | A2780R | HOXC10 |
| Upregulated | A2780R | ENST00000520259 | RP11-333A23.4 | chr8 | + | 2367 | A2780R | - |
| Upregulated | A2780R | ENST00000566968 | RP11-384P7.7 | chr9 | + | 3528 | A2780R/A2780CP | PRSS3 |
| Upregulated | OVCAR3R | ENST00000425587 | RP11-561O23.8 | chr9 | + | 340 | OVCAR3R | - |
| Upregulated | OVCAR3R | ENST00000574086 | RP11-760H22.2 | chr8 | + | 522 | OVCAR3R/A2780CP | - |
| Upregulated | A2780R&OVCAR3R | ENST00000417460 | AC003986.7 | chr7 | + | 692 | Undetermined | HDAC9 |
Note: Contrast indicates lncRNA changes with statistical significance; Seq.name is the transcript name of the lncRNA; GeneSymbol is the name of the lncRNA.