Table 3.
Functional annotation of specific DEGs in the mature fruiting body.
| Unigene ID | Mycelium read count | Fruiting body read count | Log2 fold changea | Description | Speciesb | Evalue | Identity |
|---|---|---|---|---|---|---|---|
| LE_007412 | 5 | 8,057 | 10.60 | Hydrophobin 1 | L. edodes | 2.00E-34 | 99.21 |
| LE_009311 | 35 | 7,282 | 7.67 | Hypothetical protein GYMLUDRAFT_39929 | G. luxurians FD-317 M1 | 2.00E-47 | 43.02 |
| LE_007730 | 11 | 6,695 | 9.23 | Aspartic protease | L. edodes | 0 | 98.78 |
| LE_006927 | 15 | 6,593 | 8.73 | MFS transporter | G. trabeum ATCC 11539 | 2.00E-164 | 41.88 |
| LE_007440 | 47 | 4,597 | 6.61 | Heat shock protein 9 | L. edodes | 1.00E-53 | 100.00 |
| LE_003624 | 37 | 3,315 | 6.48 | Hypothetical protein | L. edodes | 0 | 89.00 |
| LE_007464 | 24 | 3,310 | 7.10 | Gamma-glutamyl transepetidase | L. edodes | 0 | 91.85 |
| LE_006999 | 28 | 3,192 | 6.80 | DNA mismatch repair protein | G. frondosa | 6.00E-90 | 61.46 |
| LE_007861 | 4 | 3,037 | 9.49 | GPI-anchor protein | G. luxurians FD-317 M1 | 1.00E-29 | 54.90 |
| LE_007450 | 9 | 2,890 | 8.34 | Cyclohexanone monooxygenase | L. edodes | 0 | 97.00 |
| LE_007442 | 12 | 2,826 | 7.83 | O-acetylhomoserine (thiol)-lyase | R. solani AG-1 IB | 6.00E-180 | 64.80 |
| LE_011335 | 4 | 2,723 | 9.32 | Hypothetical protein GYMLUDRAFT_486395 | G. luxurians FD-317 M1 | 0 | 68.95 |
| LE_006542 | 7 | 2,330 | 8.26 | Protein kinase | F. hepatica ATCC 64428 | 9.00E-67 | 39.38 |
| LE_006982 | 40 | 2,113 | 5.70 | Amidotransferase | S. hirsutum FP-91666 SS1 | 1.00E-160 | 44.00 |
| LE_006156 | 7 | 1,962 | 8.13 | GPI-anchor protein | L. bicolor S238N-H82 | 1.00E-20 | 32.45 |
| LE_007727 | 3 | 1,853 | 9.08 | Hypothetical protein GYMLUDRAFT_73314 | G. luxurians FD-317 M1 | 4.00E-125 | 52.70 |
| LE_006715 | 15 | 1,726 | 6.79 | Cysteine hydrolase | L. edodes | 1.00E-175 | 99.00 |
| LE_007912 | 3 | 1,612 | 9.01 | Hypothetical protein | C. hominis TU502 | 1.00E-128 | 100.00 |
| LE_007695 | 7 | 1,586 | 7.70 | Hypothetical protein GYMLUDRAFT_944329 | G. luxurians FD-317 M1 | 3.00E-22 | 63.77 |
| LE_006892 | 34 | 1,580 | 5.52 | Hypothetical protein | L. sulphureus 93-53 | 3.00E-06 | 56.10 |
| LE_005107 | 36 | 1,530 | 5.40 | Transcription factor | L. edodes | 0 | 88.12 |
| LE_007489 | 19 | 1,396 | 6.19 | Hypothetical protein PLICRDRAFT_103741 | P. crispa FD-325 SS-3 | 2.00E-93 | 55.29 |
| LE_007467 | 9 | 1,385 | 7.22 | Hypothetical protein GYMLUDRAFT_89343 | G. luxurians FD-317 M1 | 4.00E-80 | 60.74 |
| LE_007396 | 22 | 1,266 | 5.83 | Cytochrome P450 | L. edodes | 0 | 86.68 |
| LE_007448 | 4 | 1,253 | 8.11 | Cytochrome P450 | L. edodes | 0 | 100.00 |
| LE_005239 | 7 | 1,240 | 7.33 | Hypothetical protein GYMLUDRAFT_39615 | G. luxurians FD-317 M1 | 3.00E-120 | 69.20 |
| LE_007459 | 2 | 1,138 | 9.26 | Glycoside hydrolase family 61 | G. luxurians FD-317 M1 | 2.00E-54 | 63.87 |
| LE_011349 | 11 | 1,085 | 6.59 | Splicing factor | L. edodes | 0 | 100 |
| LE_006616 | 31 | 927 | 4.89 | Hypothetical protein GYMLUDRAFT_265499 | G. luxurians FD-317 M1 | 0 | 66.11 |
| LE_007328 | 5 | 901 | 7.23 | Hypothetical protein GYMLUDRAFT_172776 | G. luxurians FD-317 M1 | ||
| LE_007951 | 2 | 894 | 8.73 | Hypothetical protein | L. edodes | 5.00E-109 | 96.57 |
| LE_010885 | 13 | 844 | 6.00 | Cyclin | M. roreri MCA 2997 | 3.00E-111 | 50.20 |
| LE_006898 | 23 | 844 | 5.17 | Reverse transcriptase-RNase H-integrase | L. edodes | 0 | 99.00 |
| LE_001650 | 49 | 746 | 3.92 | ARM repeat-containing protein | L. sulphureus 93-53 | 0 | 94.63 |
| LE_004420 | 16 | 740 | 5.46 | Alcohol oxidase | L. edodes | 0 | 98.43 |
| LE_007446 | 16 | 733 | 5.51 | Hypothetical protein | |||
| LE_006790 | 8 | 682 | 6.24 | Carbohydrate esterase family | G. luxurians FD-317 M1 | 0 | 82.79 |
| LE_007462 | 7 | 670 | 6.44 | Meiosis protein | L. edodes | 0 | 97.83 |
| LE_005246 | 17 | 608 | 5.11 | DDR48-Heat shock protein | L. edodes | 2.00E-106 | 87.76 |
| LE_007461 | 10 | 605 | 5.89 | MFS transporter | A. gallica | 0 | 67.12 |
| LE_006895 | 8 | 604 | 6.22 | Hypothetical protein | G. luxurians FD-317 M1 | 3.00E-122 | 52.14 |
| LE_001942 | 47 | 602 | 3.65 | Alpha/beta-hydrolase | L. edodes | 8.00E-113 | 92.27 |
| LE_010744 | 40 | 601 | 3.90 | MFS transporter | L. edodes | 0 | 97.54 |
| LE_007512 | 48 | 599 | 3.63 | CIPA | L. edodes | 3.00E-88 | 87.62 |
| LE_007498 | 1 | 587 | 8.55 | Aquaporin | L. edodes | 3.00E-161 | 77.99 |
| LE_005252 | 11 | 572 | 5.95 | Hypothetical protein GYMLUDRAFT_775031 | G. luxurians FD-317 M1 | 1.00E-156 | 57.88 |
| LE_007439 | 11 | 544 | 5.52 | Hypothetical protein | L. edodes | 0 | 85.58 |
| LE_007456 | 1 | 531 | 8.41 | Phospholipase C | L. edodes | 3.00E-16 | 54.65 |
| LE_009426 | 42 | 531 | 3.64 | Isopentenyl diphosphate isomerase | L. edodes | 0 | 99.23 |
| LE_006701 | 46 | 531 | 3.53 | Glycosyltransferase family 2 protein | M. chlorophos | 6.00E-93 | 65.40 |
| LE_011394 | 5 | 525 | 6.72 | Protein kinase | L. edodes | 0 | 99.58 |
| LE_005524 | 31 | 513 | 4.01 | Lysine decarboxylase | Phellinus noxius | 2.00E-65 | 49.35 |
aLog2 fold change indicates a significant difference between fruiting body gene counts and mycelium gene counts.
bL. edodes, Letinula edodes; G. luxurians, Gymnopus luxurians; G. trabeum, Gloeophyllum trabeum; G. frondosa, Grifola frondosa; R. solani Rhizoctonia solani; F. hepatica, Fistulina hepatica; S. hirsutum, Stereum hirsutum; L. bicolor, Laccaria bicolor; C. hominis, Cryptosporidium hominis; L. sulphureus, Laetiporus sulphureus; P. crispa, Plicaturopsis crispa; M. roreri, Moniliophthora roreri; A. gallica, Armillaria gallica; M. chlorophos, Mycena chlorophos; P. noxius, Phellinus noxi.