Table 2.
Speciesa | Subfamily | Chromosome | TPS genes | Position (bp) | Span (bp) | Intervening genes | Internal clusteringb |
---|---|---|---|---|---|---|---|
CCV | TPS-a | Chr3 | 9 | 29,395,680 | 3,598,941 | 202 | 1(9)2(1)1(22)3(2)1(168)1 |
Egr | TPS-a | Chr3 | 3 | 47,928,331 | 1,606,854 | 64 | 1(2)1(62)1 |
CCV | TPS-a | Chr4 | 3 | 11,823,925 | 14,705 | 0 | N/A |
CCV | TPS-a | Chr4 | 2 | 18,100,282 | 23,876 | 0 | N/A |
Egr | TPS-a | Chr4 | 5 | 19,896,024 | 246,197 | 7 | 1(2)3(5)1 |
CCV | TPS-a | Chr5 | 4 | 16,525,672 | 1,219,850 | 68 | 1(68)3 |
CCV | TPS-a | Chr6 | 6 | 33,461,887 | 106,929 | 0 | N/A |
Egr | TPS-a | Chr6 | 10 | 42,991,263 | 321,452 | 0 | N/A |
CCV | TPS-a | Chr7 | 3 | 2,183,056 | 809,251 | 59 | 1(58)1(1)1 |
CCV | TPS-a | Chr7 | 2 | 14,463,251 | 1,761,379 | 105 | 1(105)1 |
CCV | TPS-b1 | Chr1 | 8 | 22,285,470 | 1,866,767 | 103 | 1(64)2(1)2(36)1(1)1(1)1 |
Egr | TPS-b1 | Chr1 | 7 | 17,720,921 | 1,286,126 | 50 | 1(3)4(1)1(46)1 |
CCV | TPS-b1 | Chr2 | 2 | 2,027,307 | 13,692 | 0 | N/A |
CCV | TPS-b1 | Chr4 | 2 | 8,861,360 | 169,636 | 5 | 1(5)1 |
Egr | TPS-b1 | Chr4 | 8 | 16,009,931 | 217,347 | 7 | 1(1)1(1)2(4)2(1)2 |
CCV | TPS-b1 | Chr5 | 3 | 41,952,144 | 3,787,929 | 215 | 1(192)1(23)1 |
CCV | TPS-b1 | Chr8 | 3 | 29,799,505 | 47,398 | 3 | 1(1)1(2)1 |
CCV | TPS-b2 | Chr10 | 3 | 13,605,402 | 38,144 | 1 | 2(1)1 |
CCV | TPS-b2 | Chr11 | 5 | 23,810,145 | 420,788 | 25 | 2(25)3 |
Egr | TPS-b2 | Chr11 | 9 | 10,288,308 | 1,164,219 | 33 | 3(31)1(1)4(1)1 |
CCV | TPS-f | Chr4 | 3 | 7,135,889 | 385,574 | 31 | 1(31)2 |
Egr | TPS-f | Chr4 | 7 | 12,270,273 | 287,241 | 2 | 3(2)4 |
CCV | TPS-g | Chr2 | 2 | 19,657,471 | 29,412 | 2 | 1(2)1 |
CCV | TPS-g | Chr5 | 3 | 44,341,209 | 100,371 | 2 | 1(2)2 |
Egr | TPS-g | Chr5 | 12 | 62,540,499 | 1,272,677 | 25 | 3(2)3(2)1(19)1(1)1(1)3 |
a Egr indicate TPS clusters from E. grandis syntenic with the CCV TPS cluster directly above. Loci with only a single TPS gene are not shown
b Structure of the gene cluster, with non-TPS genes indicated by brackets. N/A indicates no intervening genes