Table 1.
Commensal microbiota library.
| Phyla | Bacteria | Strain∗ | Description | Nucleotide accession no. |
|---|---|---|---|---|
| (complete genome)/Reference | ||||
| Bacteroidetes | Bacteroides fragilis | NCTC 9343 | Type strain, appendix abscess | GenBank, CR626927 |
| Bacteroidetes | Bacteroides thetaiotaomicron | VPI-5482 | Type strain, human feces | Xu et al., 2003 |
| Firmicutes | Lactobacillus acidophilus | ATCC 700396/NCFM | Infant feces | Altermann et al., 2005 |
| Firmicutes | Lactobacillus gasseri | ATCC 33323 | Type strain | GenBank, CP000413 |
| Firmicutes | Clostridium scindens | ATCC 35704 | Type strain, human feces | GenBank, ABFY02000000 |
| Firmicutes | Clostridium hylemonae | TN-271 | Type strain, human feces | GenBank, AB023972∗∗ |
| Proteobacteria | Escherichia coli | ATCC BAA 2649 | Not type strain | |
| Actinobacteria | Bifidobacterium longum subsp. infantis | DSM 20090 | Intestine of infants | Mattarelli et al., 2008 |
∗ATCC, American Type Culture Collection; NCTC, National Collection of Type Cultures; DSM, Leibniz-Institute DSMZ-German Collection of Microorganisms and Cell Cultures.
∗∗16S rRNA, partial sequence.